COLE_LEPMA
ID COLE_LEPMA Reviewed; 419 AA.
AC P98085; Q91080;
DT 01-NOV-1995, integrated into UniProtKB/Swiss-Prot.
DT 01-NOV-1995, sequence version 1.
DT 02-JUN-2021, entry version 82.
DE RecName: Full=Inner ear-specific collagen;
DE AltName: Full=Saccular collagen;
DE Flags: Precursor;
OS Lepomis macrochirus (Bluegill) (Eupomotis macrochirus).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata;
OC Eupercaria; Centrarchiformes; Centrarchoidei; Centrarchidae; Lepomis.
OX NCBI_TaxID=13106;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA].
RX PubMed=7863331; DOI=10.1126/science.7863331;
RA Davis J.G., Oberholtzer J.C., Burns F.R., Greene M.I.;
RT "Molecular cloning and characterization of an inner ear-specific structural
RT protein.";
RL Science 267:1031-1034(1995).
CC -!- FUNCTION: Forms a microstructural matrix within the otolithic membrane.
CC {ECO:0000305}.
CC -!- SUBCELLULAR LOCATION: Secreted, extracellular space, extracellular
CC matrix {ECO:0000250}.
CC -!- TISSUE SPECIFICITY: Specialized secretory supporting cells at the outer
CC perimeter of the saccular epithelium.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAA69978.1; Type=Frameshift; Evidence={ECO:0000305};
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; U17431; AAA69978.1; ALT_FRAME; mRNA.
DR PIR; A55797; A55797.
DR PRIDE; P98085; -.
DR GO; GO:0005581; C:collagen trimer; IEA:UniProtKB-KW.
DR GO; GO:0005576; C:extracellular region; IEA:UniProtKB-KW.
DR Gene3D; 2.60.120.40; -; 1.
DR InterPro; IPR001073; C1q_dom.
DR InterPro; IPR008160; Collagen.
DR InterPro; IPR008983; Tumour_necrosis_fac-like_dom.
DR Pfam; PF00386; C1q; 1.
DR Pfam; PF01391; Collagen; 4.
DR PRINTS; PR00007; COMPLEMNTC1Q.
DR SMART; SM00110; C1Q; 1.
DR SUPFAM; SSF49842; SSF49842; 1.
DR PROSITE; PS50871; C1Q; 1.
PE 2: Evidence at transcript level;
KW Collagen; Extracellular matrix; Glycoprotein; Repeat; Secreted; Signal.
FT SIGNAL 1..19
FT /evidence="ECO:0000255"
FT CHAIN 20..419
FT /note="Inner ear-specific collagen"
FT /id="PRO_0000005712"
FT DOMAIN 275..412
FT /note="C1q"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00368"
FT REGION 20..57
FT /note="Nonhelical region (NC2)"
FT REGION 58..274
FT /note="Triple-helical region (COL1)"
FT REGION 61..277
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 275..419
FT /note="Nonhelical region (NC1)"
FT COMPBIAS 133..151
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CARBOHYD 37
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
FT CARBOHYD 320
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
SQ SEQUENCE 419 AA; 43635 MW; 570CDB9675FC0F39 CRC64;
MDAYSLSPTD STTYSSDTFS TEFHTDAIAP PGNTPGNYTL DYNECFFNFC ECCPPEKGPM
GPMGERGLPG PPGERGPLGL PGEKGETGLR GPPGPAGLPG ANGLNGDIGE KGDQGPVGLP
GVPGIPGKPG EKGDPGLKGD KGERGFSGLK GDPGERGEPG LNGTKGSIGR EGPMGPGLAG
TKGLKGEQGL KGECLQGEKG ERGPPGLRGE MGLNGTDGVK GERGEPGPLG GKGDTGARGP
PGPPGGRGMA GLRGEKGLKG VRGPRGPKGP PGESVEQIRS AFSVGLFPSR SFPPPSLPVK
FDKVFYNGEG HWDPTLNKFN VTYPGVYLFS YHITVRNRPV RAALVVNGVR KLRTRDSLYG
QDIDQASNLA LLHLTDGDQV WLETLRDWNG XYSSSEDDST FSGFLLYPDT KKPTAMENL