COLX_ARATH
ID COLX_ARATH Reviewed; 356 AA.
AC Q9C9F4; Q8GY83;
DT 05-DEC-2001, integrated into UniProtKB/Swiss-Prot.
DT 01-JUN-2001, sequence version 1.
DT 03-AUG-2022, entry version 127.
DE RecName: Full=Putative zinc finger protein At1g68190;
GN OrderedLocusNames=At1g68190; ORFNames=T22E19.18;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=11910074; DOI=10.1126/science.1071006;
RA Seki M., Narusaka M., Kamiya A., Ishida J., Satou M., Sakurai T.,
RA Nakajima M., Enju A., Akiyama K., Oono Y., Muramatsu M., Hayashizaki Y.,
RA Kawai J., Carninci P., Itoh M., Ishii Y., Arakawa T., Shibata K.,
RA Shinagawa A., Shinozaki K.;
RT "Functional annotation of a full-length Arabidopsis cDNA collection.";
RL Science 296:141-145(2002).
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the CONSTANS family. {ECO:0000305}.
CC -!- CAUTION: Lacks the conserved CCT domain, which is one of the features
CC of the CONSTANS family. {ECO:0000305}.
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DR EMBL; AC016447; AAG52592.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE34762.1; -; Genomic_DNA.
DR EMBL; CP002684; ANM59633.1; -; Genomic_DNA.
DR EMBL; AK117800; BAC42445.1; -; mRNA.
DR PIR; C96705; C96705.
DR RefSeq; NP_001321977.1; NM_001334353.1.
DR RefSeq; NP_176986.1; NM_105490.4.
DR AlphaFoldDB; Q9C9F4; -.
DR SMR; Q9C9F4; -.
DR BioGRID; 28369; 2.
DR IntAct; Q9C9F4; 2.
DR STRING; 3702.AT1G68190.1; -.
DR PaxDb; Q9C9F4; -.
DR PRIDE; Q9C9F4; -.
DR EnsemblPlants; AT1G68190.1; AT1G68190.1; AT1G68190.
DR EnsemblPlants; AT1G68190.3; AT1G68190.3; AT1G68190.
DR GeneID; 843148; -.
DR Gramene; AT1G68190.1; AT1G68190.1; AT1G68190.
DR Gramene; AT1G68190.3; AT1G68190.3; AT1G68190.
DR KEGG; ath:AT1G68190; -.
DR Araport; AT1G68190; -.
DR TAIR; locus:2199262; AT1G68190.
DR eggNOG; ENOG502QVZU; Eukaryota.
DR HOGENOM; CLU_028225_2_0_1; -.
DR InParanoid; Q9C9F4; -.
DR OMA; VVYCEAD; -.
DR PhylomeDB; Q9C9F4; -.
DR PRO; PR:Q9C9F4; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9C9F4; baseline and differential.
DR Genevisible; Q9C9F4; AT.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; ISS:TAIR.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0006355; P:regulation of transcription, DNA-templated; TAS:TAIR.
DR InterPro; IPR000315; Znf_B-box.
DR SMART; SM00336; BBOX; 2.
DR PROSITE; PS50119; ZF_BBOX; 2.
PE 2: Evidence at transcript level;
KW Metal-binding; Nucleus; Reference proteome; Repeat; Zinc; Zinc-finger.
FT CHAIN 1..356
FT /note="Putative zinc finger protein At1g68190"
FT /id="PRO_0000113294"
FT ZN_FING 14..56
FT /note="B box-type 1; atypical"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00024"
FT ZN_FING 57..97
FT /note="B box-type 2; atypical"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00024"
FT REGION 159..178
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT BINDING 14
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /ligand_label="1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00024"
FT BINDING 17
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /ligand_label="1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00024"
FT BINDING 37
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /ligand_label="1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00024"
FT BINDING 42
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /ligand_label="1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00024"
FT BINDING 57
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /ligand_label="2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00024"
FT BINDING 60
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /ligand_label="2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00024"
FT BINDING 80
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /ligand_label="2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00024"
FT BINDING 85
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /ligand_label="2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00024"
FT CONFLICT 250
FT /note="I -> F (in Ref. 3; BAC42445)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 356 AA; 40371 MW; ABC4FC500FAA0417 CRC64;
MLCIIIIENM ERVCEFCKAY RAVVYCIADT ANLCLTCDAK VHSANSLSGR HLRTVLCDSC
KNQPCVVRCF DHKMFLCHGC NDKFHGGGSS EHRRRDLRCY TGCPPAKDFA VMWGFRVMDD
DDDVSLEQSF RMVKPKVQRE GGFILEQILE LEKVQLREEN GSSSLTERGD PSPLELPKKP
EEQLIDLPQT GKELVVDFSH LSSSSTLGDS FWECKSPYNK NNQLWHQNIQ DIGVCEDTIC
SDDDFQIPDI DLTFRNFEEQ FGADPEPIAD SNNVFFVSSL DKSHEMKTFS SSFNNPIFAP
KPASSTISFS SSETDNPYSH SEEVISFCPS LSNNTRQKVI TRLKEKKRAR VEEKKA
