ID   COPB1_ORYSJ             Reviewed;         953 AA.
AC   Q53PC7; A0A0P0XZH3; A3C942; B9G9M8; Q0IU95;
DT   01-MAY-2007, integrated into UniProtKB/Swiss-Prot.
DT   24-MAY-2005, sequence version 1.
DT   03-AUG-2022, entry version 117.
DE   RecName: Full=Coatomer subunit beta-1;
DE   AltName: Full=Beta-coat protein 1;
DE            Short=Beta-COP 1;
GN   OrderedLocusNames=Os11g0174000, LOC_Os11g07280;
GN   ORFNames=OsJ_031814, OsJ_33144, OSJNBa0055G24, OSJNBb0063D09;
OS   Oryza sativa subsp. japonica (Rice).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC   Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX   NCBI_TaxID=39947;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=16188032; DOI=10.1186/1741-7007-3-20;
RG   The rice chromosomes 11 and 12 sequencing consortia;
RT   "The sequence of rice chromosomes 11 and 12, rich in disease resistance
RT   genes and recent gene duplications.";
RL   BMC Biol. 3:20-20(2005).
RN   [2]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=16100779; DOI=10.1038/nature03895;
RG   International rice genome sequencing project (IRGSP);
RT   "The map-based sequence of the rice genome.";
RL   Nature 436:793-800(2005).
RN   [3]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=18089549; DOI=10.1093/nar/gkm978;
RG   The rice annotation project (RAP);
RT   "The rice annotation project database (RAP-DB): 2008 update.";
RL   Nucleic Acids Res. 36:D1028-D1033(2008).
RN   [4]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA   Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA   Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA   Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA   Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT   "Improvement of the Oryza sativa Nipponbare reference genome using next
RT   generation sequence and optical map data.";
RL   Rice 6:4-4(2013).
RN   [5]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA   Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA   Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA   Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA   Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA   Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA   Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA   Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA   Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA   Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA   Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA   Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA   Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA   Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA   McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT   "The genomes of Oryza sativa: a history of duplications.";
RL   PLoS Biol. 3:266-281(2005).
RN   [6]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=12869764; DOI=10.1126/science.1081288;
RG   The rice full-length cDNA consortium;
RT   "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT   japonica rice.";
RL   Science 301:376-379(2003).
CC   -!- FUNCTION: The coatomer is a cytosolic protein complex that binds to
CC       dilysine motifs and reversibly associates with Golgi non-clathrin-
CC       coated vesicles, which further mediate biosynthetic protein transport
CC       from the ER, via the Golgi up to the trans Golgi network. Coatomer
CC       complex is required for budding from Golgi membranes, and is essential
CC       for the retrograde Golgi-to-ER transport of dilysine-tagged proteins
CC       (By similarity). {ECO:0000250}.
CC   -!- SUBUNIT: Oligomeric complex that consists of at least the alpha, beta,
CC       beta', gamma, delta, epsilon and zeta subunits. {ECO:0000250}.
CC   -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000250}. Golgi apparatus membrane
CC       {ECO:0000250}; Peripheral membrane protein {ECO:0000250}; Cytoplasmic
CC       side {ECO:0000250}. Cytoplasmic vesicle, COPI-coated vesicle membrane
CC       {ECO:0000250}; Peripheral membrane protein {ECO:0000250}; Cytoplasmic
CC       side {ECO:0000250}. Note=The coatomer is cytoplasmic or polymerized on
CC       the cytoplasmic side of the Golgi, as well as on the vesicles/buds
CC       originating from it. {ECO:0000250}.
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DR   EMBL; AC120539; AAX95778.1; -; Genomic_DNA.
DR   EMBL; AC123897; AAX93023.1; -; Genomic_DNA.
DR   EMBL; DP000010; ABA91740.1; -; Genomic_DNA.
DR   EMBL; AP008217; BAF27720.2; -; Genomic_DNA.
DR   EMBL; AP014967; BAT12894.1; -; Genomic_DNA.
DR   EMBL; CM000148; EEE51734.1; -; Genomic_DNA.
DR   EMBL; AK069716; -; NOT_ANNOTATED_CDS; mRNA.
DR   RefSeq; XP_015616972.1; XM_015761486.1.
DR   AlphaFoldDB; Q53PC7; -.
DR   SMR; Q53PC7; -.
DR   BioGRID; 818950; 1.
DR   STRING; 4530.OS11T0174000-01; -.
DR   PaxDb; Q53PC7; -.
DR   PRIDE; Q53PC7; -.
DR   EnsemblPlants; Os11t0174000-01; Os11t0174000-01; Os11g0174000.
DR   EnsemblPlants; Os11t0174000-03; Os11t0174000-03; Os11g0174000.
DR   GeneID; 4349913; -.
DR   Gramene; Os11t0174000-01; Os11t0174000-01; Os11g0174000.
DR   Gramene; Os11t0174000-03; Os11t0174000-03; Os11g0174000.
DR   KEGG; osa:4349913; -.
DR   eggNOG; KOG1058; Eukaryota.
DR   HOGENOM; CLU_006949_0_0_1; -.
DR   InParanoid; Q53PC7; -.
DR   OMA; QCGFMAA; -.
DR   OrthoDB; 195812at2759; -.
DR   Proteomes; UP000000763; Chromosome 11.
DR   Proteomes; UP000007752; Chromosome 11.
DR   Proteomes; UP000059680; Chromosome 11.
DR   ExpressionAtlas; Q53PC7; baseline and differential.
DR   Genevisible; Q53PC7; OS.
DR   GO; GO:0030126; C:COPI vesicle coat; IBA:GO_Central.
DR   GO; GO:0000139; C:Golgi membrane; IEA:UniProtKB-SubCell.
DR   GO; GO:0005198; F:structural molecule activity; IEA:InterPro.
DR   GO; GO:0006888; P:endoplasmic reticulum to Golgi vesicle-mediated transport; IBA:GO_Central.
DR   GO; GO:0006891; P:intra-Golgi vesicle-mediated transport; IBA:GO_Central.
DR   GO; GO:0006886; P:intracellular protein transport; IEA:InterPro.
DR   Gene3D; 1.25.10.10; -; 1.
DR   InterPro; IPR011989; ARM-like.
DR   InterPro; IPR016024; ARM-type_fold.
DR   InterPro; IPR002553; Clathrin/coatomer_adapt-like_N.
DR   InterPro; IPR011710; Coatomer_bsu_C.
DR   InterPro; IPR016460; COPB1.
DR   InterPro; IPR029446; COPB1_appendage_platform_dom.
DR   PANTHER; PTHR10635; PTHR10635; 1.
DR   Pfam; PF01602; Adaptin_N; 1.
DR   Pfam; PF07718; Coatamer_beta_C; 1.
DR   Pfam; PF14806; Coatomer_b_Cpla; 1.
DR   PIRSF; PIRSF005727; Coatomer_beta_subunit; 1.
DR   SUPFAM; SSF48371; SSF48371; 1.
PE   2: Evidence at transcript level;
KW   Cytoplasm; Cytoplasmic vesicle; ER-Golgi transport; Golgi apparatus;
KW   Membrane; Protein transport; Reference proteome; Repeat; Transport.
FT   CHAIN           1..953
FT                   /note="Coatomer subunit beta-1"
FT                   /id="PRO_0000285618"
FT   REPEAT          49..87
FT                   /note="HEAT 1"
FT   REPEAT          93..127
FT                   /note="HEAT 2"
FT   REPEAT          128..165
FT                   /note="HEAT 3"
FT   REPEAT          314..351
FT                   /note="HEAT 4"
FT   REPEAT          393..430
FT                   /note="HEAT 5"
FT   CONFLICT        653
FT                   /note="E -> G (in Ref. 6; AK069716)"
FT                   /evidence="ECO:0000305"
SQ   SEQUENCE   953 AA;  105438 MW;  60D73AF146DA7627 CRC64;
     MEKPCTLLVH FDKGSPSMAN EIKADLEGSD VAAKVDAMKR AIMLLLNGET LPHLFITVVR
     YVLPSEDHTI QKLLLLYLEI VDKRDVASGK VLPEMILICQ NLRNNLQHPN EYIRGVTLRF
     LCRLNEPELL EPLIPSILAN LDHRHHFIRR HALSAISAIY RLPHGDQLLP DAPEVVERAL
     TGEQDASARR NGFLMLCACA QERAVAYLLT NAERVAEWPD LLQMAAVDLI RKVCRSPNRA
     DKGRYIKIII SLLSAPNSAV VYESAGALVS LSSAPTAVRA AANTYCQLLS SQSDNNVKLI
     VLDRLHELRA SHRDVMVDVV MDVLRALSSP NVDVRRKVLD LVLDLLTPRN VEEVVMYLKK
     EVVKTQAGDL EKGGEYRQML VQAIHSCAVE YPEVAGSVVH LLMDFLGDTN VAAAVDVVLF
     VREIIETNPK LRVSMIQRLI DTFYQIRASR VCSCALWILG EYSLSLSEVE SAISTIKQCL
     GDLPFYTVSE EGESTDASKP AQPVVNSVTV SSRRPVVLAD GTYATQSAAT ETAISSPAVA
     PGSLSSTQNL RSLILSGDFF LAAVVACTLT KLVLRLEEVQ PSKAEANKAS TGALLIMVSI
     LQLGQSSYLP HPIDNDSYDR IVLCVRLLCN TGDDVRKVWL QSCRQSFTKM LAEKQFRETE
     EMKAKAQISH AQPDDLIDFY HLKSRRGMSQ LELEDAVQDD LKAATGEFTK DADDANRLNR
     ILQLTGFSDP VYAEAYVTVH HYDIVLDVTV INRTKETLQN LCLELATMGD LKLVDRPQNY
     TLAPESSKQI RANIKVSSTE TGVIFGNIVY ETSNVMERSV VVLNDIHIDI MDYISPATCA
     DVAFRNMWAE FEWENKVAVN TVIQDEKEFL DHIIKSTNMK CLTPPSALDG ECGFIAANLY
     AKSVFGEDAL VNISVEKQAD GKLSGYIRIR SKTQGIALSL GDKITLKQKG GSS