ID   COX5C_ORYSJ             Reviewed;          63 AA.
AC   Q9SXX7; A3CIF7; Q0IMM5;
DT   07-JUN-2004, integrated into UniProtKB/Swiss-Prot.
DT   23-JAN-2007, sequence version 3.
DT   03-AUG-2022, entry version 107.
DE   RecName: Full=Cytochrome c oxidase subunit 5C;
DE   AltName: Full=Cytochrome c oxidase polypeptide Vc;
GN   Name=COX5C; OrderedLocusNames=Os12g0561000, LOC_Os12g37419;
GN   ORFNames=OsJ_36508 {ECO:0000312|EMBL:EAZ20870.1};
OS   Oryza sativa subsp. japonica (Rice).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC   Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX   NCBI_TaxID=39947;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [MRNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=10586516; DOI=10.1266/ggs.74.71;
RA   Hamanaka S., Ohtsu K., Kadowaki K., Nakazono M., Hirai A.;
RT   "Identification of cDNA encoding cytochrome c oxidase subunit 5c (COX5c)
RT   from rice: comparison of its expression with nuclear-encoded and
RT   mitochondrial-encoded COX genes.";
RL   Genes Genet. Syst. 74:71-75(1999).
RN   [2]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=16100779; DOI=10.1038/nature03895;
RG   International rice genome sequencing project (IRGSP);
RT   "The map-based sequence of the rice genome.";
RL   Nature 436:793-800(2005).
RN   [3]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=18089549; DOI=10.1093/nar/gkm978;
RG   The rice annotation project (RAP);
RT   "The rice annotation project database (RAP-DB): 2008 update.";
RL   Nucleic Acids Res. 36:D1028-D1033(2008).
RN   [4]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA   Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA   Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA   Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA   Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT   "Improvement of the Oryza sativa Nipponbare reference genome using next
RT   generation sequence and optical map data.";
RL   Rice 6:4-4(2013).
RN   [5]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA   Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA   Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA   Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA   Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA   Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA   Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA   Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA   Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA   Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA   Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA   Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA   Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA   Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA   McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT   "The genomes of Oryza sativa: a history of duplications.";
RL   PLoS Biol. 3:266-281(2005).
CC   -!- FUNCTION: This protein is one of the nuclear-coded polypeptide chains
CC       of cytochrome c oxidase, the terminal oxidase in mitochondrial electron
CC       transport. {ECO:0000250}.
CC   -!- SUBCELLULAR LOCATION: Mitochondrion inner membrane {ECO:0000250}.
CC   -!- SIMILARITY: Belongs to the cytochrome c oxidase subunit 5C family.
CC       {ECO:0000305}.
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DR   EMBL; AB027123; BAA77682.1; -; mRNA.
DR   EMBL; AP008218; BAF30040.1; -; Genomic_DNA.
DR   EMBL; AP014968; BAT17642.1; -; Genomic_DNA.
DR   EMBL; CM000149; EAZ20870.1; -; Genomic_DNA.
DR   PIR; T52093; T52093.
DR   RefSeq; XP_015619874.1; XM_015764388.1.
DR   AlphaFoldDB; Q9SXX7; -.
DR   SMR; Q9SXX7; -.
DR   STRING; 4530.OS12T0561000-01; -.
DR   PaxDb; Q9SXX7; -.
DR   PRIDE; Q9SXX7; -.
DR   EnsemblPlants; Os12t0561000-01; Os12t0561000-01; Os12g0561000.
DR   GeneID; 4352516; -.
DR   Gramene; Os12t0561000-01; Os12t0561000-01; Os12g0561000.
DR   KEGG; osa:4352516; -.
DR   eggNOG; ENOG502S8H1; Eukaryota.
DR   HOGENOM; CLU_177335_1_0_1; -.
DR   InParanoid; Q9SXX7; -.
DR   OMA; KEICIGA; -.
DR   OrthoDB; 1619997at2759; -.
DR   Proteomes; UP000000763; Chromosome 12.
DR   Proteomes; UP000007752; Chromosome 12.
DR   Proteomes; UP000059680; Chromosome 12.
DR   Genevisible; Q9SXX7; OS.
DR   GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR   GO; GO:0005746; C:mitochondrial respirasome; IEA:InterPro.
DR   InterPro; IPR008432; COX5C.
DR   PANTHER; PTHR34372; PTHR34372; 1.
DR   PIRSF; PIRSF038131; COX5C; 1.
PE   3: Inferred from homology;
KW   Membrane; Mitochondrion; Mitochondrion inner membrane; Reference proteome;
KW   Transmembrane; Transmembrane helix.
FT   INIT_MET        1
FT                   /note="Removed"
FT                   /evidence="ECO:0000250"
FT   CHAIN           2..63
FT                   /note="Cytochrome c oxidase subunit 5C"
FT                   /id="PRO_0000128193"
FT   TRANSMEM        16..34
FT                   /note="Helical"
FT                   /evidence="ECO:0000255"
SQ   SEQUENCE   63 AA;  6978 MW;  E58E29E552F679C9 CRC64;
     MAGGRIAHAT LKGPSVVKEI CIGLTLGLVA GGLWKMHHWN EQRKTRSFYD MLEKGQISVV
     VEE