CRIM1_ARATH
ID CRIM1_ARATH Reviewed; 225 AA.
AC Q94AL8; Q9C7R2;
DT 28-NOV-2012, integrated into UniProtKB/Swiss-Prot.
DT 01-DEC-2001, sequence version 1.
DT 03-AUG-2022, entry version 98.
DE RecName: Full=Cold-regulated 413 inner membrane protein 1, chloroplastic;
DE Short=AtCOR413-IM1;
DE AltName: Full=Cold-regulated 413 thylakoid membrane 1;
DE Short=AtCOR413-TM1;
DE Flags: Precursor;
GN Name=COR413IM1; Synonyms=COR413TM1, COR414TM1; OrderedLocusNames=At1g29395;
GN ORFNames=F15D2.29;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=11910074; DOI=10.1126/science.1071006;
RA Seki M., Narusaka M., Kamiya A., Ishida J., Satou M., Sakurai T.,
RA Nakajima M., Enju A., Akiyama K., Oono Y., Muramatsu M., Hayashizaki Y.,
RA Kawai J., Carninci P., Itoh M., Ishii Y., Arakawa T., Shibata K.,
RA Shinagawa A., Shinozaki K.;
RT "Functional annotation of a full-length Arabidopsis cDNA collection.";
RL Science 296:141-145(2002).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
RN [6]
RP PROTEIN SEQUENCE OF 77-83, TRANSIT PEPTIDE CLEAVAGE SITE, TOPOLOGY,
RP SUBCELLULAR LOCATION, AND INDUCTION BY COLD.
RX PubMed=18643950; DOI=10.1111/j.1365-3040.2008.01854.x;
RA Okawa K., Nakayama K., Kakizaki T., Yamashita T., Inaba T.;
RT "Identification and characterization of Cor413im proteins as novel
RT components of the chloroplast inner envelope.";
RL Plant Cell Environ. 31:1470-1483(2008).
RN [7]
RP INDUCTION BY ABSCISIC ACID; FREEZING AND DROUGHT, GENE FAMILY, AND
RP NOMENCLATURE.
RX PubMed=12746512; DOI=10.1104/pp.102.015255;
RA Breton G., Danyluk J., Charron J.-B.F., Sarhan F.;
RT "Expression profiling and bioinformatic analyses of a novel stress-
RT regulated multispanning transmembrane protein family from cereals and
RT Arabidopsis.";
RL Plant Physiol. 132:64-74(2003).
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast inner membrane
CC {ECO:0000269|PubMed:18643950}; Multi-pass membrane protein
CC {ECO:0000269|PubMed:18643950}.
CC -!- INDUCTION: Accumulates in response to abscisic acid (ABA), cold,
CC freezing and drought treatments. {ECO:0000269|PubMed:12746512,
CC ECO:0000269|PubMed:18643950}.
CC -!- SIMILARITY: Belongs to the Cold-regulated 413 protein family.
CC {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAG51739.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AC068667; AAG51739.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002684; AEE31081.1; -; Genomic_DNA.
DR EMBL; AK118801; BAC43391.1; -; mRNA.
DR EMBL; AY045942; AAK76616.1; -; mRNA.
DR EMBL; AY133821; AAM91755.1; -; mRNA.
DR EMBL; AY087022; AAM64583.1; -; mRNA.
DR PIR; E86416; E86416.
DR RefSeq; NP_564328.1; NM_102679.6.
DR AlphaFoldDB; Q94AL8; -.
DR STRING; 3702.AT1G29395.1; -.
DR TCDB; 9.B.166.1.1; the chloroplastic cold-regulated 413 inner membrane protein 1, cor413im1 (cor413im1) family.
DR PaxDb; Q94AL8; -.
DR PRIDE; Q94AL8; -.
DR EnsemblPlants; AT1G29395.1; AT1G29395.1; AT1G29395.
DR GeneID; 839815; -.
DR Gramene; AT1G29395.1; AT1G29395.1; AT1G29395.
DR KEGG; ath:AT1G29395; -.
DR Araport; AT1G29395; -.
DR TAIR; locus:505006154; AT1G29395.
DR eggNOG; ENOG502RXZY; Eukaryota.
DR HOGENOM; CLU_106898_0_0_1; -.
DR InParanoid; Q94AL8; -.
DR OMA; CYAAPPM; -.
DR OrthoDB; 1410071at2759; -.
DR PhylomeDB; Q94AL8; -.
DR PRO; PR:Q94AL8; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q94AL8; baseline and differential.
DR Genevisible; Q94AL8; AT.
DR GO; GO:0009507; C:chloroplast; HDA:TAIR.
DR GO; GO:0009941; C:chloroplast envelope; IDA:TAIR.
DR GO; GO:0009535; C:chloroplast thylakoid membrane; IDA:TAIR.
DR GO; GO:0031357; C:integral component of chloroplast inner membrane; IDA:TAIR.
DR GO; GO:0070417; P:cellular response to cold; IEP:TAIR.
DR GO; GO:0042631; P:cellular response to water deprivation; IEP:TAIR.
DR GO; GO:0009631; P:cold acclimation; IMP:TAIR.
DR GO; GO:0009737; P:response to abscisic acid; IEP:TAIR.
DR InterPro; IPR008892; COR413.
DR PANTHER; PTHR33596; PTHR33596; 1.
DR Pfam; PF05562; WCOR413; 1.
PE 1: Evidence at protein level;
KW Chloroplast; Direct protein sequencing; Membrane; Plastid;
KW Plastid inner membrane; Reference proteome; Transit peptide; Transmembrane;
KW Transmembrane helix.
FT TRANSIT 1..76
FT /note="Chloroplast"
FT /evidence="ECO:0000269|PubMed:18643950"
FT CHAIN 77..225
FT /note="Cold-regulated 413 inner membrane protein 1,
FT chloroplastic"
FT /id="PRO_0000420444"
FT TOPO_DOM 77
FT /note="Stromal"
FT /evidence="ECO:0000255"
FT TRANSMEM 78..98
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TOPO_DOM 99..102
FT /note="Chloroplast intermembrane"
FT /evidence="ECO:0000255"
FT TRANSMEM 103..123
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TOPO_DOM 124..128
FT /note="Stromal"
FT /evidence="ECO:0000255"
FT TRANSMEM 129..149
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TOPO_DOM 150..151
FT /note="Chloroplast intermembrane"
FT /evidence="ECO:0000255"
FT TRANSMEM 152..172
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TOPO_DOM 173..175
FT /note="Stromal"
FT /evidence="ECO:0000255"
FT TRANSMEM 176..196
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TOPO_DOM 197..204
FT /note="Chloroplast intermembrane"
FT /evidence="ECO:0000255"
FT TRANSMEM 205..225
FT /note="Helical"
FT /evidence="ECO:0000255"
SQ SEQUENCE 225 AA; 24354 MW; E771DF6EFB04E63E CRC64;
MASLCLSSSR IVSLHHQKPF LSLKLRSRPS DLSGLGRHTS PVCFNPLRLS GDRQRTATVS
TRVEKRRKRG SSVVCYAAPI SANSLQWIST ISCLALMLAR GTGIHKSVVV PLFALHAPSS
IVAWIKGEYG VWAAFLALIA RLFFTFPGEL ELPFIALLLV IVAPYQVMNI RGKQEGAIIA
IAISGFLAFQ HFSRAGSLEK AYEKGSVLAT VAIIGVTVVS LLLLL
