CRL5_ORYSJ
ID CRL5_ORYSJ Reviewed; 639 AA.
AC Q84Z02; Q0D8V3;
DT 23-MAY-2018, integrated into UniProtKB/Swiss-Prot.
DT 01-JUN-2003, sequence version 1.
DT 03-AUG-2022, entry version 102.
DE RecName: Full=AP2-like ethylene-responsive transcription factor CRL5 {ECO:0000305};
DE AltName: Full=Protein CROWN ROOTLESS 5;
DE AltName: Full=Protein PLETHORA 8 {ECO:0000303|PubMed:21807632};
DE Short=OsPLT8 {ECO:0000303|PubMed:21807632};
GN Name=CRL5 {ECO:0000303|PubMed:21481033};
GN Synonyms=PLT8 {ECO:0000303|PubMed:21807632};
GN OrderedLocusNames=Os07g0124700 {ECO:0000312|EMBL:BAS99889.1},
GN LOC_Os07g03250 {ECO:0000305};
GN ORFNames=P0474G09.118 {ECO:0000312|EMBL:BAC56815.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [4]
RP TISSUE SPECIFICITY.
RX PubMed=21807632; DOI=10.1093/abbs/gmr068;
RA Li P., Xue H.;
RT "Structural characterization and expression pattern analysis of the rice
RT PLT gene family.";
RL Acta Biochim. Biophys. Sin. 43:688-697(2011).
RN [5]
RP FUNCTION, TISSUE SPECIFICITY, INDUCTION BY AUXIN, AND DISRUPTION PHENOTYPE.
RC STRAIN=cv. Kinmaze;
RX PubMed=21481033; DOI=10.1111/j.1365-313x.2011.04610.x;
RA Kitomi Y., Ito H., Hobo T., Aya K., Kitano H., Inukai Y.;
RT "The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is
RT involved in crown root initiation in rice through the induction of OsRR1, a
RT type-A response regulator of cytokinin signaling.";
RL Plant J. 67:472-484(2011).
CC -!- FUNCTION: Acts as positive regulator of adventitious (crown) root
CC formation by promoting its initiation. Promotes adventitious root
CC initiation through repression of cytokinin signaling by positively
CC regulating the two-component response regulator RR1. Regulated by the
CC auxin response factor and transcriptional activator ARF23/ARF1.
CC {ECO:0000269|PubMed:21481033}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00366}.
CC -!- TISSUE SPECIFICITY: Highly expressed at the base of the stem. Expressed
CC in stems. Expressed a low levels in crown roots and seeds
CC (PubMed:21807632). Expressed in the stem region where adventitious
CC (crown) root initiation occurs (PubMed:21481033).
CC {ECO:0000269|PubMed:21481033, ECO:0000269|PubMed:21807632}.
CC -!- INDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
CC -!- DISRUPTION PHENOTYPE: Strong reduction of adventitious (crown) root
CC formation. {ECO:0000269|PubMed:21481033}.
CC -!- SIMILARITY: Belongs to the AP2/ERF transcription factor family. AP2
CC subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAF20720.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=BAS99889.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AP005309; BAC56815.1; -; Genomic_DNA.
DR EMBL; AP008213; BAF20720.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP014963; BAS99889.1; ALT_SEQ; Genomic_DNA.
DR AlphaFoldDB; Q84Z02; -.
DR SMR; Q84Z02; -.
DR STRING; 4530.OS07T0124700-01; -.
DR PRIDE; Q84Z02; -.
DR eggNOG; ENOG502QQ82; Eukaryota.
DR HOGENOM; CLU_013549_1_0_1; -.
DR InParanoid; Q84Z02; -.
DR Proteomes; UP000000763; Chromosome 7.
DR Proteomes; UP000059680; Chromosome 7.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR GO; GO:0048830; P:adventitious root development; IMP:UniProtKB.
DR GO; GO:0080037; P:negative regulation of cytokinin-activated signaling pathway; IMP:UniProtKB.
DR CDD; cd00018; AP2; 2.
DR Gene3D; 3.30.730.10; -; 2.
DR InterPro; IPR001471; AP2/ERF_dom.
DR InterPro; IPR036955; AP2/ERF_dom_sf.
DR InterPro; IPR016177; DNA-bd_dom_sf.
DR Pfam; PF00847; AP2; 2.
DR PRINTS; PR00367; ETHRSPELEMNT.
DR SMART; SM00380; AP2; 2.
DR SUPFAM; SSF54171; SSF54171; 2.
DR PROSITE; PS51032; AP2_ERF; 2.
PE 2: Evidence at transcript level;
KW Developmental protein; DNA-binding; Nucleus; Reference proteome; Repeat;
KW Transcription; Transcription regulation.
FT CHAIN 1..639
FT /note="AP2-like ethylene-responsive transcription factor
FT CRL5"
FT /id="PRO_0000444148"
FT DNA_BIND 288..351
FT /note="AP2/ERF 1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00366"
FT DNA_BIND 387..445
FT /note="AP2/ERF 2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00366"
FT REGION 25..59
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 258..277
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 547..579
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 43..59
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 547..573
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 639 AA; 67622 MW; EE4BC5123C56E68F CRC64;
MTNSNNGNGG TNAAASGWLG FSLSPHMASS TMDEHHHVHH HQQQQQQQQQ QQHHQQQQHG
LFFPSVTTAA AAAAYGLAGD VVAATNGYYS QLASMPLKSD GSLCIMEALR RTDQDHHGPK
LEDFLGAAQP AMALSLDNTS SFYYGGGGAA AAGHGQHGYL QACDLYGGPA APSLVTAADE
EAAAAAAAMA SWVAARGAAT AYATGAADAN AAENVLPSAT AAQHLHHPLA LSMSSGSLSS
CITAGEYGMA AVAAADGGRK RGGAGGGGQK QPVHHRKSID TFGQRTSQYR GVTRHRWTGR
YEAHLWDNSC KKEGQTRKGR QGGYDMEEKA ARAYDLAALK YWGPSTHINF PLEDYQEELE
EMKNMTRQEY VAHLRRKSSG FSRGASMYRG VTRHHQHGRW QARIGRVSGN KDLYLGTFST
QEEAAEAYDV AAIKFRGLNA VTNFDITRYD VDKIMASNTL LPADLARRNA ATTTSKDDHS
AAGAGAIVSV HSAADIAVAD TLWKATTAPR QQQQHHDDVV LSGADQAAFS VLHDLVAVDA
AAAHQQQQQQ QHMSMSAASS LVTSLSNSRE GSPDRGGGLS MLFAKPSPAV AASAQQQAST
KLMAAPLPLG SWVSSPPASA RPPAVSIAHM PLFAAWTDA
