CRP1_ORYSJ
ID CRP1_ORYSJ Reviewed; 661 AA.
AC Q84ZD2; A0A0N7KNM4; A3BKX3;
DT 25-OCT-2017, integrated into UniProtKB/Swiss-Prot.
DT 01-JUN-2003, sequence version 1.
DT 03-AUG-2022, entry version 128.
DE RecName: Full=Pentatricopeptide repeat-containing protein CRP1 homolog, chloroplastic {ECO:0000305};
DE Flags: Precursor;
GN OrderedLocusNames=Os07g0548300 {ECO:0000312|EMBL:BAF21841.1},
GN LOC_Os07g36390 {ECO:0000305};
GN ORFNames=OsJ_24656 {ECO:0000312|EMBL:EAZ40212.1},
GN P0534A03.109 {ECO:0000312|EMBL:BAC57720.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
CC -!- FUNCTION: Required for the processing and translation of chloroplast
CC mRNAs. {ECO:0000250|UniProtKB:A0A1D6IEG9}.
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast {ECO:0000255}.
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAT02026.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AP004401; BAC57720.1; -; Genomic_DNA.
DR EMBL; AP008213; BAF21841.1; -; Genomic_DNA.
DR EMBL; AP014963; BAT02026.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CM000144; EAZ40212.1; -; Genomic_DNA.
DR RefSeq; XP_015644975.1; XM_015789489.1.
DR AlphaFoldDB; Q84ZD2; -.
DR SMR; Q84ZD2; -.
DR STRING; 4530.OS07T0548300-01; -.
DR PRIDE; Q84ZD2; -.
DR GeneID; 4343532; -.
DR KEGG; osa:4343532; -.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_49_12_1; -.
DR InParanoid; Q84ZD2; -.
DR OrthoDB; 1344243at2759; -.
DR Proteomes; UP000000763; Chromosome 7.
DR Proteomes; UP000007752; Chromosome 7.
DR Proteomes; UP000059680; Chromosome 7.
DR GO; GO:0009507; C:chloroplast; IBA:GO_Central.
DR GO; GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
DR GO; GO:0006417; P:regulation of translation; IEA:UniProtKB-KW.
DR Gene3D; 1.25.40.10; -; 4.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 2.
DR Pfam; PF13041; PPR_2; 3.
DR Pfam; PF13812; PPR_3; 2.
DR SUPFAM; SSF48452; SSF48452; 1.
DR TIGRFAMs; TIGR00756; PPR; 10.
DR PROSITE; PS51375; PPR; 14.
PE 3: Inferred from homology;
KW Chloroplast; mRNA processing; Plastid; Reference proteome; Repeat;
KW Transit peptide; Translation regulation.
FT TRANSIT 1..57
FT /note="Chloroplast"
FT /evidence="ECO:0000255"
FT CHAIN 58..661
FT /note="Pentatricopeptide repeat-containing protein CRP1
FT homolog, chloroplastic"
FT /id="PRO_0000441907"
FT REPEAT 147..181
FT /note="PPR 1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00708"
FT REPEAT 182..219
FT /note="PPR 2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00708"
FT REPEAT 220..254
FT /note="PPR 3"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00708"
FT REPEAT 255..290
FT /note="PPR 4"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00708"
FT REPEAT 291..325
FT /note="PPR 5"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00708"
FT REPEAT 326..360
FT /note="PPR 6"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00708"
FT REPEAT 361..395
FT /note="PPR 7"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00708"
FT REPEAT 396..430
FT /note="PPR 8"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00708"
FT REPEAT 431..465
FT /note="PPR 9"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00708"
FT REPEAT 466..500
FT /note="PPR 10"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00708"
FT REPEAT 501..535
FT /note="PPR 11"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00708"
FT REPEAT 536..570
FT /note="PPR 12"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00708"
FT REPEAT 571..605
FT /note="PPR 13"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00708"
FT REPEAT 606..640
FT /note="PPR 14"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00708"
FT CONFLICT 192
FT /note="S -> L (in Ref. 4; EAZ40212)"
FT /evidence="ECO:0000305"
FT CONFLICT 201
FT /note="D -> E (in Ref. 4; EAZ40212)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 661 AA; 72805 MW; 365C670471D59FE1 CRC64;
MPASSLLPPT LLPHRHRLRL PPAGCSTSSS PSATRYDFDP LLSYLSTTSS SPSPPPTSVL
PVTESRLAAS YAAVPAREWH ALLRELAATD ASLPLAFALL PFLHRHRLCF PLDLLLSSLL
HSLSVSGRLL PHSLLLSFPP SLSDPPSPLL LNSLLAASAA ASRPAVALRL LGLLREHSFL
PDLASYSHLL ASLLNTRDPP DAALLDRLLG DLRESRLEPD APLFSDLISA FARARLPDAA
LELLASAQAI GLTPRSNAVT ALISSLGSAR RVAEAEALFL EFFLAGEIKP RTRAYNALLK
GYVKIGSLKN AEQVLDEMSQ CGVAPDEATY SLLVDAYTRA GRWESARILL KEMEADGVKP
SSYVFSRILA GFRDRGEWQK AFAVLREMHA SGVRPDRHFY NVMIDTFGKY NCLGHAMDAF
DRMREEGIEP DVVTWNTLID AHCKGGRHDR AIELFDEMRE SNCPLGTTTY NIMINLLGEE
QRWEGVEAML AEMKEQGLVP NIITYTTLVD VYGRSGRFKE AVDCIEAMKA DGLKPSPTMY
HALVNAYAQR GLADHALNVV KAMRADGLEA STVVLNSLIN AFGEDRRIAE AFSVLQFMKE
NGLRPDVITY TTLMKALIRV EQFEKVPVIY EEMITSGCAP DRKARAMLRS ALRYMKHMRV
A
