CRPM1_ARATH
ID CRPM1_ARATH Reviewed; 197 AA.
AC Q9XIM7;
DT 28-NOV-2012, integrated into UniProtKB/Swiss-Prot.
DT 01-NOV-1999, sequence version 1.
DT 25-MAY-2022, entry version 112.
DE RecName: Full=Cold-regulated 413 plasma membrane protein 1;
DE Short=AtCOR413-PM1;
DE AltName: Full=WCOR413-like protein;
GN Name=COR413PM1; Synonyms=FL3-5A3; OrderedLocusNames=At2g15970;
GN ORFNames=F19G14.3;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA], INDUCTION BY ABSCISIC ACID; FREEZING AND
RP DROUGHT, GENE FAMILY, AND NOMENCLATURE.
RC STRAIN=cv. Columbia;
RX PubMed=12746512; DOI=10.1104/pp.102.015255;
RA Breton G., Danyluk J., Charron J.-B.F., Sarhan F.;
RT "Expression profiling and bioinformatic analyses of a novel stress-
RT regulated multispanning transmembrane protein family from cereals and
RT Arabidopsis.";
RL Plant Physiol. 132:64-74(2003).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617197; DOI=10.1038/45471;
RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S.,
RA Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
RL Nature 402:761-768(1999).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=11910074; DOI=10.1126/science.1071006;
RA Seki M., Narusaka M., Kamiya A., Ishida J., Satou M., Sakurai T.,
RA Nakajima M., Enju A., Akiyama K., Oono Y., Muramatsu M., Hayashizaki Y.,
RA Kawai J., Carninci P., Itoh M., Ishii Y., Arakawa T., Shibata K.,
RA Shinagawa A., Shinozaki K.;
RT "Functional annotation of a full-length Arabidopsis cDNA collection.";
RL Science 296:141-145(2002).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
RN [7]
RP INDUCTION BY ABSCISIC ACID.
RX PubMed=15772289; DOI=10.1105/tpc.104.027474;
RA Osakabe Y., Maruyama K., Seki M., Satou M., Shinozaki K.,
RA Yamaguchi-Shinozaki K.;
RT "Leucine-rich repeat receptor-like kinase1 is a key membrane-bound
RT regulator of abscisic acid early signaling in Arabidopsis.";
RL Plant Cell 17:1105-1119(2005).
CC -!- SUBCELLULAR LOCATION: Membrane {ECO:0000255}; Multi-pass membrane
CC protein {ECO:0000255}.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=1;
CC Comment=Additional isoforms seem to exist.;
CC Name=1;
CC IsoId=Q9XIM7-1; Sequence=Displayed;
CC -!- INDUCTION: Accumulates in response to abscisic acid (ABA), freezing and
CC drought treatments. {ECO:0000269|PubMed:12746512,
CC ECO:0000269|PubMed:15772289}.
CC -!- SIMILARITY: Belongs to the Cold-regulated 413 protein family.
CC {ECO:0000305}.
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; AF283004; AAG13393.1; -; mRNA.
DR EMBL; AC006438; AAD41971.1; -; Genomic_DNA.
DR EMBL; CP002685; AEC06451.1; -; Genomic_DNA.
DR EMBL; AB044404; BAB17682.1; -; mRNA.
DR EMBL; AY093767; AAM10389.1; -; mRNA.
DR EMBL; AY143813; AAN28752.1; -; mRNA.
DR EMBL; AY088558; AAM66090.1; -; mRNA.
DR PIR; C84535; C84535.
DR RefSeq; NP_179196.1; NM_127156.4. [Q9XIM7-1]
DR AlphaFoldDB; Q9XIM7; -.
DR BioGRID; 1451; 27.
DR IntAct; Q9XIM7; 23.
DR STRING; 3702.AT2G15970.1; -.
DR PaxDb; Q9XIM7; -.
DR ProteomicsDB; 224415; -. [Q9XIM7-1]
DR EnsemblPlants; AT2G15970.1; AT2G15970.1; AT2G15970. [Q9XIM7-1]
DR GeneID; 816092; -.
DR Gramene; AT2G15970.1; AT2G15970.1; AT2G15970. [Q9XIM7-1]
DR KEGG; ath:AT2G15970; -.
DR Araport; AT2G15970; -.
DR TAIR; locus:2044641; AT2G15970.
DR eggNOG; ENOG502QQY4; Eukaryota.
DR HOGENOM; CLU_081976_1_0_1; -.
DR InParanoid; Q9XIM7; -.
DR OMA; WIGTFIC; -.
DR PhylomeDB; Q9XIM7; -.
DR PRO; PR:Q9XIM7; -.
DR Proteomes; UP000006548; Chromosome 2.
DR ExpressionAtlas; Q9XIM7; baseline and differential.
DR Genevisible; Q9XIM7; AT.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0000325; C:plant-type vacuole; HDA:TAIR.
DR GO; GO:0005886; C:plasma membrane; ISS:TAIR.
DR GO; GO:0042631; P:cellular response to water deprivation; IEP:TAIR.
DR GO; GO:0009631; P:cold acclimation; IEP:TAIR.
DR GO; GO:0009737; P:response to abscisic acid; IEP:TAIR.
DR InterPro; IPR008892; COR413.
DR PANTHER; PTHR33596; PTHR33596; 1.
DR Pfam; PF05562; WCOR413; 1.
PE 2: Evidence at transcript level;
KW Alternative splicing; Membrane; Reference proteome; Transmembrane;
KW Transmembrane helix.
FT CHAIN 1..197
FT /note="Cold-regulated 413 plasma membrane protein 1"
FT /id="PRO_0000420440"
FT TOPO_DOM 1..40
FT /note="Extracellular"
FT /evidence="ECO:0000255"
FT TRANSMEM 41..61
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TOPO_DOM 62..71
FT /note="Cytoplasmic"
FT /evidence="ECO:0000255"
FT TRANSMEM 72..92
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TOPO_DOM 93..94
FT /note="Extracellular"
FT /evidence="ECO:0000255"
FT TRANSMEM 95..115
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TOPO_DOM 116..117
FT /note="Cytoplasmic"
FT /evidence="ECO:0000255"
FT TRANSMEM 118..138
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TOPO_DOM 139..141
FT /note="Extracellular"
FT /evidence="ECO:0000255"
FT TRANSMEM 142..162
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TOPO_DOM 163..176
FT /note="Cytoplasmic"
FT /evidence="ECO:0000255"
FT TRANSMEM 177..197
FT /note="Helical"
FT /evidence="ECO:0000255"
SQ SEQUENCE 197 AA; 21605 MW; CEF88C89FC6EAE3D CRC64;
MPMKSLRNDH GTLKAMIGSD FNELTIAAKN LATHAFTLTG LGFGTSVLEW VASIAAIYLL
VLDRTNWKTN MLTSLLIPYI FFSLPSLIFG IFRGEIGKWI AFVAVVVQLF FPKHAREYLE
LPVALVLLAV VAPNLIAGTF RDSWIGLAIC LGIGCYLLQE HIRASGGFRN AFTKANGISN
TVGIICLVVF PVWALIF
