CRPM2_ARATH
ID CRPM2_ARATH Reviewed; 203 AA.
AC Q9SVL6;
DT 28-NOV-2012, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-2000, sequence version 1.
DT 03-AUG-2022, entry version 97.
DE RecName: Full=Cold-regulated 413 plasma membrane protein 2;
DE Short=AtCOR413-PM2;
GN Name=COR413PM2; OrderedLocusNames=At3g50830; ORFNames=F18B3.110;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA], GENE FAMILY, AND NOMENCLATURE.
RC STRAIN=cv. Columbia;
RX PubMed=12746512; DOI=10.1104/pp.102.015255;
RA Breton G., Danyluk J., Charron J.-B.F., Sarhan F.;
RT "Expression profiling and bioinformatic analyses of a novel stress-
RT regulated multispanning transmembrane protein family from cereals and
RT Arabidopsis.";
RL Plant Physiol. 132:64-74(2003).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130713; DOI=10.1038/35048706;
RA Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B.,
RA Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M.,
RA Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V.,
RA Choisne N., Artiguenave F., Robert C., Brottier P., Wincker P.,
RA Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H.,
RA Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H.,
RA Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A.,
RA Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H.,
RA Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J.,
RA Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B.,
RA Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D.,
RA de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E.,
RA Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G.,
RA Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X.,
RA Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M.,
RA Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B.,
RA Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J.,
RA Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C.,
RA Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y.,
RA Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K.,
RA Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A.,
RA Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T.,
RA Watanabe A., Yamada M., Yasuda M., Tabata S.;
RT "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.";
RL Nature 408:820-822(2000).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
CC -!- SUBCELLULAR LOCATION: Cell membrane {ECO:0000250}; Multi-pass membrane
CC protein {ECO:0000250}.
CC -!- SIMILARITY: Belongs to the Cold-regulated 413 protein family.
CC {ECO:0000305}.
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DR EMBL; AF283005; AAG13394.1; -; mRNA.
DR EMBL; AL049862; CAB42912.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE78715.1; -; Genomic_DNA.
DR EMBL; AF360305; AAK26015.1; -; mRNA.
DR EMBL; AY056356; AAL07242.1; -; mRNA.
DR PIR; T08404; T08404.
DR RefSeq; NP_190652.1; NM_114943.5.
DR AlphaFoldDB; Q9SVL6; -.
DR BioGRID; 9565; 3.
DR IntAct; Q9SVL6; 3.
DR STRING; 3702.AT3G50830.1; -.
DR PaxDb; Q9SVL6; -.
DR PRIDE; Q9SVL6; -.
DR ProteomicsDB; 220343; -.
DR EnsemblPlants; AT3G50830.1; AT3G50830.1; AT3G50830.
DR GeneID; 824247; -.
DR Gramene; AT3G50830.1; AT3G50830.1; AT3G50830.
DR KEGG; ath:AT3G50830; -.
DR Araport; AT3G50830; -.
DR TAIR; locus:2077982; AT3G50830.
DR eggNOG; ENOG502QQY4; Eukaryota.
DR HOGENOM; CLU_081976_1_0_1; -.
DR InParanoid; Q9SVL6; -.
DR OMA; KWFASFA; -.
DR OrthoDB; 1327217at2759; -.
DR PhylomeDB; Q9SVL6; -.
DR PRO; PR:Q9SVL6; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9SVL6; baseline and differential.
DR Genevisible; Q9SVL6; AT.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0000325; C:plant-type vacuole; HDA:TAIR.
DR GO; GO:0005886; C:plasma membrane; ISS:TAIR.
DR InterPro; IPR008892; COR413.
DR PANTHER; PTHR33596; PTHR33596; 1.
DR Pfam; PF05562; WCOR413; 1.
PE 2: Evidence at transcript level;
KW Cell membrane; Membrane; Reference proteome; Transmembrane;
KW Transmembrane helix.
FT CHAIN 1..203
FT /note="Cold-regulated 413 plasma membrane protein 2"
FT /id="PRO_0000420441"
FT TOPO_DOM 1..43
FT /note="Extracellular"
FT /evidence="ECO:0000255"
FT TRANSMEM 44..64
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TOPO_DOM 65..74
FT /note="Cytoplasmic"
FT /evidence="ECO:0000255"
FT TRANSMEM 75..95
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TOPO_DOM 96..98
FT /note="Extracellular"
FT /evidence="ECO:0000255"
FT TRANSMEM 99..119
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TOPO_DOM 120
FT /note="Cytoplasmic"
FT /evidence="ECO:0000255"
FT TRANSMEM 121..141
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TOPO_DOM 142..144
FT /note="Extracellular"
FT /evidence="ECO:0000255"
FT TRANSMEM 145..165
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TOPO_DOM 166..179
FT /note="Cytoplasmic"
FT /evidence="ECO:0000255"
FT TRANSMEM 180..200
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TOPO_DOM 201..203
FT /note="Extracellular"
FT /evidence="ECO:0000255"
SQ SEQUENCE 203 AA; 22754 MW; 26D350995A3D6D0D CRC64;
MGRMDYLAMK TDDVDTVALV NSDMEELKVA AKKLFSDVSK LGGLGFGVSF LKFLASFAAI
YLLILDRTNW KTKMLTSLLI PYIFLSLPSV IFNFLSGDVG KWIAFVAVVL RLFFPKHFPD
WLEMPGSLIL LLVVSPHFLA HHIRGTWIGT VISLFIGCYL LQEHIRASGG FRNSFTQPRG
VSNTLGIILL LVYPVWALIV RVM
