CRPM3_ARATH
ID CRPM3_ARATH Reviewed; 189 AA.
AC O64834; B3H4D1;
DT 28-NOV-2012, integrated into UniProtKB/Swiss-Prot.
DT 01-AUG-1998, sequence version 1.
DT 03-AUG-2022, entry version 105.
DE RecName: Full=Cold-regulated 413 plasma membrane protein 3;
DE Short=AtCOR413-PM3;
GN OrderedLocusNames=At2g23680; ORFNames=F26B6.33;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617197; DOI=10.1038/45471;
RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S.,
RA Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
RL Nature 402:761-768(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
RC STRAIN=cv. Columbia;
RX PubMed=11910074; DOI=10.1126/science.1071006;
RA Seki M., Narusaka M., Kamiya A., Ishida J., Satou M., Sakurai T.,
RA Nakajima M., Enju A., Akiyama K., Oono Y., Muramatsu M., Hayashizaki Y.,
RA Kawai J., Carninci P., Itoh M., Ishii Y., Arakawa T., Shibata K.,
RA Shinagawa A., Shinozaki K.;
RT "Functional annotation of a full-length Arabidopsis cDNA collection.";
RL Science 296:141-145(2002).
CC -!- SUBCELLULAR LOCATION: Cell membrane {ECO:0000250}; Multi-pass membrane
CC protein {ECO:0000250}.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=2;
CC Name=1;
CC IsoId=O64834-1; Sequence=Displayed;
CC Name=2;
CC IsoId=O64834-2; Sequence=VSP_044489;
CC -!- SIMILARITY: Belongs to the Cold-regulated 413 protein family.
CC {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AV824982; Type=Frameshift; Evidence={ECO:0000305};
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DR EMBL; AC003040; AAM14866.1; -; Genomic_DNA.
DR EMBL; AC004482; AAC17100.1; -; Genomic_DNA.
DR EMBL; CP002685; AEC07479.1; -; Genomic_DNA.
DR EMBL; CP002685; AEC07480.1; -; Genomic_DNA.
DR EMBL; AV824982; -; NOT_ANNOTATED_CDS; mRNA.
DR PIR; T02423; T02423.
DR RefSeq; NP_001118373.1; NM_001124901.2. [O64834-2]
DR RefSeq; NP_179948.1; NM_127931.3. [O64834-1]
DR AlphaFoldDB; O64834; -.
DR SMR; O64834; -.
DR BioGRID; 2251; 1.
DR IntAct; O64834; 1.
DR STRING; 3702.AT2G23680.1; -.
DR PaxDb; O64834; -.
DR PRIDE; O64834; -.
DR EnsemblPlants; AT2G23680.1; AT2G23680.1; AT2G23680. [O64834-1]
DR EnsemblPlants; AT2G23680.2; AT2G23680.2; AT2G23680. [O64834-2]
DR GeneID; 816899; -.
DR Gramene; AT2G23680.1; AT2G23680.1; AT2G23680. [O64834-1]
DR Gramene; AT2G23680.2; AT2G23680.2; AT2G23680. [O64834-2]
DR KEGG; ath:AT2G23680; -.
DR Araport; AT2G23680; -.
DR TAIR; locus:2049003; AT2G23680.
DR eggNOG; ENOG502QQY4; Eukaryota.
DR OMA; LIHSYGV; -.
DR PhylomeDB; O64834; -.
DR PRO; PR:O64834; -.
DR Proteomes; UP000006548; Chromosome 2.
DR ExpressionAtlas; O64834; baseline and differential.
DR Genevisible; O64834; AT.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell.
DR InterPro; IPR008892; COR413.
DR PANTHER; PTHR33596; PTHR33596; 1.
DR Pfam; PF05562; WCOR413; 1.
PE 2: Evidence at transcript level;
KW Alternative splicing; Cell membrane; Membrane; Reference proteome;
KW Transmembrane; Transmembrane helix.
FT CHAIN 1..189
FT /note="Cold-regulated 413 plasma membrane protein 3"
FT /id="PRO_0000420442"
FT TOPO_DOM 1..24
FT /note="Extracellular"
FT /evidence="ECO:0000255"
FT TRANSMEM 25..45
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TOPO_DOM 46..55
FT /note="Cytoplasmic"
FT /evidence="ECO:0000255"
FT TRANSMEM 56..76
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TOPO_DOM 77..79
FT /note="Extracellular"
FT /evidence="ECO:0000255"
FT TRANSMEM 80..100
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TOPO_DOM 101..104
FT /note="Cytoplasmic"
FT /evidence="ECO:0000255"
FT TRANSMEM 105..125
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TOPO_DOM 126..168
FT /note="Extracellular"
FT /evidence="ECO:0000255"
FT TRANSMEM 169..189
FT /note="Helical"
FT /evidence="ECO:0000255"
FT VAR_SEQ 1..42
FT /note="Missing (in isoform 2)"
FT /evidence="ECO:0000305"
FT /id="VSP_044489"
SQ SEQUENCE 189 AA; 21368 MW; EBC357847DFC09B7 CRC64;
MENIEYLNEI QAVAGKLIHS YGVPVMITLF LRWLASIVAV FLMILDQTKW KYSNNIMASL
LAPYLFSSLP IVIFQVLRNG VGKWIALLTV ILRLFLPNHF HESLEIPGAT ILLIVVTPSD
IGAIFRDDLR YTGGDVCLLT SFYLINKHTK ACGGIKNSFT QKDKVTYSIC LWILFVYPIL
SSFAALFYL
