CSLC9_ORYSJ
ID CSLC9_ORYSJ Reviewed; 595 AA.
AC Q6AU53; Q10EE1; Q8W1N8; Q8W5S2;
DT 26-FEB-2008, integrated into UniProtKB/Swiss-Prot.
DT 26-FEB-2008, sequence version 2.
DT 03-AUG-2022, entry version 93.
DE RecName: Full=Probable xyloglucan glycosyltransferase 9;
DE EC=2.4.1.-;
DE AltName: Full=Cellulose synthase-like protein C9;
DE AltName: Full=OsCslC9;
GN Name=CSLC9; OrderedLocusNames=Os03g0770800, LOC_Os03g56060;
GN ORFNames=OSJNBa0072F13.8;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA / MRNA] (ISOFORM 1).
RX PubMed=11842136; DOI=10.1104/pp.010875;
RA Hazen S.P., Scott-Craig J.S., Walton J.D.;
RT "Cellulose synthase-like genes of rice.";
RL Plant Physiol. 128:336-340(2002).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16109971; DOI=10.1101/gr.3869505;
RG The rice chromosome 3 sequencing consortium;
RA Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B.,
RA Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T.,
RA Fadrosh D., Bera J., Weaver B., Jin S., Johri S., Reardon M., Webb K.,
RA Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T.,
RA Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R.,
RA Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., Rambo T., Currie J.,
RA Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S.,
RA Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M.,
RA Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M.,
RA Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L.,
RA O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R.,
RA Jin W., Lee H.R., Jiang J., Jackson S.;
RT "Sequence, annotation, and analysis of synteny between rice chromosome 3
RT and diverged grass species.";
RL Genome Res. 15:1284-1291(2005).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [5]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
CC -!- FUNCTION: Probable beta-1,4-glucan synthase rather involved in the
CC synthesis of the xyloglucan backbone than cellulose. Seems to work
CC simultaneously with xyloglucan 6-xylosyltransferase. Xyloglucan is a
CC noncellulosic polysaccharides of plant cell wall and consists of a
CC glucan backbone substituted by xylose, galactose and fucose (By
CC similarity). {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Golgi apparatus membrane {ECO:0000305}; Multi-
CC pass membrane protein {ECO:0000305}.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=2;
CC Name=1;
CC IsoId=Q6AU53-1; Sequence=Displayed;
CC Name=2;
CC IsoId=Q6AU53-2; Sequence=VSP_031473;
CC -!- SIMILARITY: Belongs to the glycosyltransferase 2 family. Plant
CC cellulose synthase-like C subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=ABF99087.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AF435641; AAL38526.1; -; mRNA.
DR EMBL; AF435653; AAL32452.1; -; Genomic_DNA.
DR EMBL; AF435652; AAL32452.1; JOINED; Genomic_DNA.
DR EMBL; AC133450; AAT85054.1; -; Genomic_DNA.
DR EMBL; DP000009; ABF99087.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP008209; BAF13318.1; -; Genomic_DNA.
DR EMBL; AP014959; BAS86591.1; -; Genomic_DNA.
DR EMBL; AK121805; -; NOT_ANNOTATED_CDS; mRNA.
DR AlphaFoldDB; Q6AU53; -.
DR STRING; 4530.OS03T0770800-01; -.
DR CAZy; GT2; Glycosyltransferase Family 2.
DR PaxDb; Q6AU53; -.
DR PRIDE; Q6AU53; -.
DR EnsemblPlants; Os03t0770800-01; Os03t0770800-01; Os03g0770800. [Q6AU53-2]
DR Gramene; Os03t0770800-01; Os03t0770800-01; Os03g0770800. [Q6AU53-2]
DR eggNOG; ENOG502QTBF; Eukaryota.
DR HOGENOM; CLU_012856_1_0_1; -.
DR InParanoid; Q6AU53; -.
DR OMA; CFYIHIK; -.
DR Proteomes; UP000000763; Chromosome 3.
DR Proteomes; UP000059680; Chromosome 3.
DR Genevisible; Q6AU53; OS.
DR GO; GO:0005794; C:Golgi apparatus; IBA:GO_Central.
DR GO; GO:0000139; C:Golgi membrane; IEA:UniProtKB-SubCell.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0016757; F:glycosyltransferase activity; IBA:GO_Central.
DR GO; GO:0071555; P:cell wall organization; IEA:UniProtKB-KW.
DR Gene3D; 3.90.550.10; -; 1.
DR InterPro; IPR001173; Glyco_trans_2-like.
DR InterPro; IPR029044; Nucleotide-diphossugar_trans.
DR Pfam; PF13632; Glyco_trans_2_3; 1.
DR SUPFAM; SSF53448; SSF53448; 1.
PE 2: Evidence at transcript level;
KW Alternative splicing; Cell wall biogenesis/degradation;
KW Glycosyltransferase; Golgi apparatus; Membrane; Reference proteome;
KW Transferase; Transmembrane; Transmembrane helix.
FT CHAIN 1..595
FT /note="Probable xyloglucan glycosyltransferase 9"
FT /id="PRO_0000319387"
FT TRANSMEM 30..50
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 77..97
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 408..428
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 433..453
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 545..564
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 570..590
FT /note="Helical"
FT /evidence="ECO:0000255"
FT ACT_SITE 177
FT /evidence="ECO:0000255"
FT ACT_SITE 330
FT /evidence="ECO:0000255"
FT BINDING 236
FT /ligand="substrate"
FT /evidence="ECO:0000255"
FT BINDING 238
FT /ligand="substrate"
FT /evidence="ECO:0000255"
FT VAR_SEQ 14
FT /note="A -> AA (in isoform 2)"
FT /evidence="ECO:0000303|PubMed:12869764"
FT /id="VSP_031473"
FT CONFLICT 128..129
FT /note="DA -> HP (in Ref. 1; AAL38526)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 595 AA; 68088 MW; 2D9420DA9A031409 CRC64;
MAPWSGLWGG KLAAGESPVL RSRFYAFIRA FVVLSVLLLI VELGAYINGW DDLAASALAL
PVIGVESLYA SWLRFRATYV APFIQFLTDA CVVLFLIQSA DRLIQCLGCF YIHLKRIKPN
PKSPALPDAE DPDAAYYPMV LVQIPMCNEK EVYQQSIAAV CNLDWPRSNF LVQVLDDSDD
PTTQTLIREE VLKWQQNGAR IVYRHRVLRD GYKAGNLKSA MSCSYVKDYE FVAIFDADFQ
PNPDFLKRTV PHFKDNDELG LVQARWSFVN KDENLLTRLQ NINLCFHFEV EQQVNGIFLN
FFGFNGTAGV WRIKALDDSG GWMERTTVED MDIAVRAHLR GWKFIFLNDV ECQCELPESY
EAYRKQQHRW HSGPMQLFRL CLPDIIKCKI VFWKKANLIF LFFLLRKLIL PFYSFTLFCI
ILPMTMFVPE AELPDWVVCY IPALMSLLNI LPSPKSFPFI IPYLLFENTM SVTKFNAMIS
GLFQLGNAYE WVVTKKSGRS SEGDLISLAP KELKHQKTES APNLDAIAKE QSAPRKDVKK
KHNRIYKKEL ALSLLLLTAA ARSLLSKQGI HFYFLLFQGI SFLLVGLDLI GEQIE
