CSLD1_ORYSJ
ID CSLD1_ORYSJ Reviewed; 1127 AA.
AC Q8W3F9; Q0IVD0; Q7XBU0;
DT 26-FEB-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2002, sequence version 1.
DT 03-AUG-2022, entry version 120.
DE RecName: Full=Cellulose synthase-like protein D1;
DE EC=2.4.1.-;
DE AltName: Full=OsCslD1;
GN Name=CSLD1; OrderedLocusNames=Os10g0578200, LOC_Os10g42750;
GN ORFNames=OsJ_031301, OSJNBa0035H01.10;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12791992; DOI=10.1126/science.1083523;
RA Yu Y., Rambo T., Currie J., Saski C., Kim H.-R., Collura K., Thompson S.,
RA Simmons J., Yang T.-J., Nah G., Patel A.J., Thurmond S., Henry D.,
RA Oates R., Palmer M., Pries G., Gibson J., Anderson H., Paradkar M.,
RA Crane L., Dale J., Carver M.B., Wood T., Frisch D., Engler F.,
RA Soderlund C., Palmer L.E., Teytelman L., Nascimento L., De la Bastide M.,
RA Spiegel L., Ware D., O'Shaughnessy A., Dike S., Dedhia N., Preston R.,
RA Huang E., Ferraro K., Kuit K., Miller B., Zutavern T., Katzenberger F.,
RA Muller S., Balija V., Martienssen R.A., Stein L., Minx P., Johnson D.,
RA Cordum H., Mardis E., Cheng Z., Jiang J., Wilson R., McCombie W.R.,
RA Wing R.A., Yuan Q., Ouyang S., Liu J., Jones K.M., Gansberger K.,
RA Moffat K., Hill J., Tsitrin T., Overton L., Bera J., Kim M., Jin S.,
RA Tallon L., Ciecko A., Pai G., Van Aken S., Utterback T., Reidmuller S.,
RA Bormann J., Feldblyum T., Hsiao J., Zismann V., Blunt S., de Vazeille A.R.,
RA Shaffer T., Koo H., Suh B., Yang Q., Haas B., Peterson J., Pertea M.,
RA Volfovsky N., Wortman J., White O., Salzberg S.L., Fraser C.M., Buell C.R.,
RA Messing J., Song R., Fuks G., Llaca V., Kovchak S., Young S., Bowers J.E.,
RA Paterson A.H., Johns M.A., Mao L., Pan H., Dean R.A.;
RT "In-depth view of structure, activity, and evolution of rice chromosome
RT 10.";
RL Science 300:1566-1569(2003).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 871-1127.
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [7]
RP IDENTIFICATION.
RX PubMed=11842136; DOI=10.1104/pp.010875;
RA Hazen S.P., Scott-Craig J.S., Walton J.D.;
RT "Cellulose synthase-like genes of rice.";
RL Plant Physiol. 128:336-340(2002).
RN [8]
RP FUNCTION, DISRUPTION PHENOTYPE, TISSUE SPECIFICITY, DEVELOPMENTAL STAGE,
RP AND INDUCTION.
RX PubMed=17259288; DOI=10.1104/pp.106.091546;
RA Kim C.M., Park S.H., Je B.I., Park S.H., Park S.J., Piao H.L., Eun M.Y.,
RA Dolan L., Han C.-D.;
RT "OsCSLD1, a cellulose synthase-like D1 gene, is required for root hair
RT morphogenesis in rice.";
RL Plant Physiol. 143:1220-1230(2007).
CC -!- FUNCTION: Thought to be a Golgi-localized beta-glycan synthase that
CC polymerize the backbones of noncellulosic polysaccharides
CC (hemicelluloses) of plant cell wall. Required for synthesis of a cell
CC wall polysaccharide essential for root hair elongation, but not
CC initiation. May be the functional ortholog of Arabidopsis CSLD3/KOJAK.
CC {ECO:0000269|PubMed:17259288}.
CC -!- SUBCELLULAR LOCATION: Golgi apparatus membrane {ECO:0000305}; Multi-
CC pass membrane protein {ECO:0000305}.
CC -!- TISSUE SPECIFICITY: Specifically expressed in root hair cells.
CC {ECO:0000269|PubMed:17259288}.
CC -!- INDUCTION: Down-regulated by 1-N-naphthylphthalamic acid (NPA), an
CC auxin efflux inhibitor. {ECO:0000269|PubMed:17259288}.
CC -!- DISRUPTION PHENOTYPE: Plants develop short elongated root hair with
CC kinks and swellings along their length. {ECO:0000269|PubMed:17259288}.
CC -!- SIMILARITY: Belongs to the glycosyltransferase 2 family. Plant
CC cellulose synthase-like D subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAF27335.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AC027037; AAL58185.1; -; Genomic_DNA.
DR EMBL; DP000086; AAP55168.1; -; Genomic_DNA.
DR EMBL; AP008216; BAF27335.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP014966; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; CM000147; EAZ17092.1; -; Genomic_DNA.
DR EMBL; AK110534; -; NOT_ANNOTATED_CDS; mRNA.
DR EMBL; BK000089; DAA01752.1; -; Genomic_DNA.
DR RefSeq; XP_015614302.1; XM_015758816.1.
DR RefSeq; XP_015614303.1; XM_015758817.1.
DR RefSeq; XP_015614304.1; XM_015758818.1.
DR RefSeq; XP_015614305.1; XM_015758819.1.
DR AlphaFoldDB; Q8W3F9; -.
DR SMR; Q8W3F9; -.
DR STRING; 4530.OS10T0578200-01; -.
DR CAZy; GT2; Glycosyltransferase Family 2.
DR PaxDb; Q8W3F9; -.
DR PRIDE; Q8W3F9; -.
DR EnsemblPlants; Os10t0578200-01; Os10t0578200-01; Os10g0578200.
DR GeneID; 4349505; -.
DR Gramene; Os10t0578200-01; Os10t0578200-01; Os10g0578200.
DR KEGG; osa:4349505; -.
DR InParanoid; Q8W3F9; -.
DR OrthoDB; 679241at2759; -.
DR PlantReactome; R-OSA-1119314; Cellulose biosynthesis.
DR PlantReactome; R-OSA-9639861; Development of root hair.
DR Proteomes; UP000000763; Chromosome 10.
DR Proteomes; UP000007752; Chromosome 10.
DR Proteomes; UP000059680; Chromosome 10.
DR GO; GO:0000139; C:Golgi membrane; IEA:UniProtKB-SubCell.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0005886; C:plasma membrane; IBA:GO_Central.
DR GO; GO:0016760; F:cellulose synthase (UDP-forming) activity; IEA:InterPro.
DR GO; GO:0051753; F:mannan synthase activity; IBA:GO_Central.
DR GO; GO:0071555; P:cell wall organization; IEA:UniProtKB-KW.
DR GO; GO:0030244; P:cellulose biosynthetic process; IEA:InterPro.
DR GO; GO:0009833; P:plant-type primary cell wall biogenesis; IBA:GO_Central.
DR Gene3D; 3.30.40.10; -; 1.
DR Gene3D; 3.90.550.10; -; 1.
DR InterPro; IPR005150; Cellulose_synth.
DR InterPro; IPR029044; Nucleotide-diphossugar_trans.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR Pfam; PF03552; Cellulose_synt; 1.
PE 2: Evidence at transcript level;
KW Cell wall biogenesis/degradation; Glycosyltransferase; Golgi apparatus;
KW Membrane; Reference proteome; Transferase; Transmembrane;
KW Transmembrane helix.
FT CHAIN 1..1127
FT /note="Cellulose synthase-like protein D1"
FT /id="PRO_0000319391"
FT TRANSMEM 262..282
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 292..312
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 910..930
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 936..956
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 982..1002
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 1025..1045
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 1059..1079
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 1089..1109
FT /note="Helical"
FT /evidence="ECO:0000255"
FT REGION 1..24
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT ACT_SITE 392
FT /evidence="ECO:0000255"
FT ACT_SITE 828
FT /evidence="ECO:0000255"
FT CONFLICT 1004
FT /note="S -> P (in Ref. 6; AK110534)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 1127 AA; 125873 MW; B6060641F8E8E340 CRC64;
MASKGILKNG GKPPTAPSSA APTVVFGRRT DSGRFISYSR DDLDSEISSV DFQDYHVHIP
MTPDNQPMDP AAGDEQQYVS SSLFTGGFNS VTRAHVMEKQ ASSARATVSA CMVQGCGSKI
MRNGRGADIL PCECDFKICV DCFTDAVKGG GGVCPGCKEP YKHAEWEEVV SASNHDAINR
ALSLPHGHGH GPKMERRLSL VKQNGGAPGE FDHNRWLFET KGTYGYGNAI WPEDDGVAGH
PKELMSKPWR PLTRKLRIQA AVISPYRLLV LIRLVALGLF LMWRIKHQNE DAIWLWGMSI
VCELWFALSW VLDQLPKLCP INRATDLSVL KDKFETPTPS NPTGKSDLPG IDIFVSTADP
EKEPVLVTAN TILSILAADY PVDKLACYVS DDGGALLTFE AMAEAASFAN LWVPFCRKHE
IEPRNPDSYF NLKRDPFKNK VKGDFVKDRR RVKREYDEFK VRVNGLPDAI RRRSDAYHAR
EEIQAMNLQR EKMKAGGDEQ QLEPIKIPKA TWMADGTHWP GTWLQASPEH ARGDHAGIIQ
VMLKPPSPSP SSSGGDMEKR VDLSGVDTRL PMLVYVSREK RPGYDHNKKA GAMNALVRAS
AIMSNGPFIL NLDCDHYVYN SKAFREGMCF MMDRGGDRLC YVQFPQRFEG IDPSDRYANH
NTVFFDVNMR ALDGLQGPVY VGTGCLFRRI ALYGFDPPRS KDHTTPWSCC LPRRRRTRSQ
PQPQEEEEET MALRMDMDGA MNMASFPKKF GNSSFLIDSI PVAEFQGRPL ADHPSVKNGR
PPGALTIPRE TLDASIVAEA ISVVSCWYEE KTEWGTRVGW IYGSVTEDVV TGYRMHNRGW
KSVYCVTHRD AFRGTAPINL TDRLHQVLRW ATGSVEIFFS RNNALFASSK MKVLQRIAYL
NVGIYPFTSV FLIVYCFLPA LSLFSGQFIV QTLNVTFLTY LLIITITLCL LAMLEIKWSG
IALEEWWRNE QFWLIGGTSA HLAAVLQGLL KVIAGIEISF TLTSKQLGDD VDDEFAELYA
VKWTSLMIPP LTIIMINLVA IAVGFSRTIY STIPQWSKLL GGVFFSFWVL AHLYPFAKGL
MGRRGRTPTI VYVWSGLVAI TISLLWIAIK PPSAQANSQL GGSFSFP
