CSLD2_ORYSJ
ID CSLD2_ORYSJ Reviewed; 1170 AA.
AC Q9LHZ7; B7EXX7; Q7PC68; Q8W1N0;
DT 26-FEB-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 03-AUG-2022, entry version 119.
DE RecName: Full=Cellulose synthase-like protein D2;
DE EC=2.4.1.-;
DE AltName: Full=OsCslD2;
GN Name=CSLD2; OrderedLocusNames=Os06g0111800, LOC_Os06g02180;
GN ORFNames=OsJ_019064, P0029D06.17;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [6]
RP NUCLEOTIDE SEQUENCE [MRNA] OF 817-998, AND IDENTIFICATION.
RX PubMed=11842136; DOI=10.1104/pp.010875;
RA Hazen S.P., Scott-Craig J.S., Walton J.D.;
RT "Cellulose synthase-like genes of rice.";
RL Plant Physiol. 128:336-340(2002).
RN [7]
RP TISSUE SPECIFICITY.
RX PubMed=17259288; DOI=10.1104/pp.106.091546;
RA Kim C.M., Park S.H., Je B.I., Park S.H., Park S.J., Piao H.L., Eun M.Y.,
RA Dolan L., Han C.-D.;
RT "OsCSLD1, a cellulose synthase-like D1 gene, is required for root hair
RT morphogenesis in rice.";
RL Plant Physiol. 143:1220-1230(2007).
CC -!- FUNCTION: Thought to be a Golgi-localized beta-glycan synthase that
CC polymerize the backbones of noncellulosic polysaccharides
CC (hemicelluloses) of plant cell wall.
CC -!- SUBCELLULAR LOCATION: Golgi apparatus membrane {ECO:0000305}; Multi-
CC pass membrane protein {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the glycosyltransferase 2 family. Plant
CC cellulose synthase-like D subfamily. {ECO:0000305}.
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DR EMBL; AP001552; BAA93027.1; -; Genomic_DNA.
DR EMBL; AP008212; BAF18503.1; -; Genomic_DNA.
DR EMBL; AP014962; BAS95797.1; -; Genomic_DNA.
DR EMBL; CM000143; EAZ35581.1; -; Genomic_DNA.
DR EMBL; AK105393; BAG97224.1; -; mRNA.
DR EMBL; AF435649; AAL38534.1; -; mRNA.
DR EMBL; BK000900; DAA01753.1; -; Genomic_DNA.
DR RefSeq; XP_015643356.1; XM_015787870.1.
DR RefSeq; XP_015643357.1; XM_015787871.1.
DR AlphaFoldDB; Q9LHZ7; -.
DR SMR; Q9LHZ7; -.
DR STRING; 4530.OS06T0111800-02; -.
DR CAZy; GT2; Glycosyltransferase Family 2.
DR PaxDb; Q9LHZ7; -.
DR PRIDE; Q9LHZ7; -.
DR EnsemblPlants; Os06t0111800-01; Os06t0111800-01; Os06g0111800.
DR EnsemblPlants; Os06t0111800-02; Os06t0111800-02; Os06g0111800.
DR GeneID; 4339895; -.
DR Gramene; Os06t0111800-01; Os06t0111800-01; Os06g0111800.
DR Gramene; Os06t0111800-02; Os06t0111800-02; Os06g0111800.
DR KEGG; osa:4339895; -.
DR eggNOG; ENOG502QU14; Eukaryota.
DR HOGENOM; CLU_001418_1_0_1; -.
DR InParanoid; Q9LHZ7; -.
DR OMA; TELMNRP; -.
DR OrthoDB; 679241at2759; -.
DR PlantReactome; R-OSA-1119314; Cellulose biosynthesis.
DR Proteomes; UP000000763; Chromosome 6.
DR Proteomes; UP000007752; Chromosome 6.
DR Proteomes; UP000059680; Chromosome 6.
DR ExpressionAtlas; Q9LHZ7; baseline and differential.
DR Genevisible; Q9LHZ7; OS.
DR GO; GO:0000139; C:Golgi membrane; IEA:UniProtKB-SubCell.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0005886; C:plasma membrane; IBA:GO_Central.
DR GO; GO:0016760; F:cellulose synthase (UDP-forming) activity; IEA:InterPro.
DR GO; GO:0051753; F:mannan synthase activity; IBA:GO_Central.
DR GO; GO:0071555; P:cell wall organization; IEA:UniProtKB-KW.
DR GO; GO:0030244; P:cellulose biosynthetic process; IEA:InterPro.
DR GO; GO:0009833; P:plant-type primary cell wall biogenesis; IBA:GO_Central.
DR Gene3D; 3.30.40.10; -; 1.
DR Gene3D; 3.90.550.10; -; 1.
DR InterPro; IPR005150; Cellulose_synth.
DR InterPro; IPR029044; Nucleotide-diphossugar_trans.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR Pfam; PF03552; Cellulose_synt; 1.
DR SUPFAM; SSF53448; SSF53448; 1.
PE 2: Evidence at transcript level;
KW Cell wall biogenesis/degradation; Coiled coil; Glycosyltransferase;
KW Golgi apparatus; Membrane; Reference proteome; Transferase; Transmembrane;
KW Transmembrane helix.
FT CHAIN 1..1170
FT /note="Cellulose synthase-like protein D2"
FT /id="PRO_0000319393"
FT TRANSMEM 311..331
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 341..361
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 955..975
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 981..1001
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 1027..1047
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 1070..1090
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 1104..1124
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 1134..1154
FT /note="Helical"
FT /evidence="ECO:0000255"
FT REGION 1..48
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 54..73
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 269..295
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 527..551
FT /evidence="ECO:0000255"
FT COMPBIAS 1..21
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT ACT_SITE 441
FT /evidence="ECO:0000255"
FT ACT_SITE 873
FT /evidence="ECO:0000255"
SQ SEQUENCE 1170 AA; 130138 MW; 2BD863A83DB451AF CRC64;
MASSGGGGLR HSNSSRLSRM SYSGEDGRAQ APGGGGDRPM VTFARRTHSG RYVSYSRDDL
DSELGNSGDM SPESGQEFLN YHVTIPATPD NQPMDPAISA RVEEQYVSNS LFTGGFNSVT
RAHLMDKVIE SEASHPQMAG AKGSSCAING CDAKVMSDER GDDILPCECD FKICADCFAD
AVKNGGACPG CKDPYKATEL DDVVGARPTL SLPPPPGGLP ASRMERRLSI MRSQKAMTRS
QTGDWDHNRW LFETKGTYGY GNAIWPKENE VDNGGGGGGG GGLGGGDGQP AEFTSKPWRP
LTRKLKIPAG VLSPYRLLIL IRMAVLGLFL AWRIKHKNED AMWLWGMSVV CELWFGLSWL
LDQLPKLCPV NRATDLAVLK DKFETPTPSN PNGRSDLPGL DIFVSTADPE KEPPLVTANT
ILSILAADYP VEKLSCYVSD DGGALLTFEA MAEAASFANM WVPFCRKHDI EPRNPESYFN
LKRDPYKNKV RSDFVKDRRR VKREYDEFKV RINSLPDSIR RRSDAYHARE EIKAMKRQRE
AALDDVVEAV KIPKATWMAD GTHWPGTWIQ PSAEHARGDH AGIIQVMLKP PSDDPLYGTS
GEEGRPLDFT EVDIRLPMLV YVSREKRPGY DHNKKAGAMN ALVRSSAVMS NGPFILNLDC
DHYVYNSQAF REGMCFMMDR GGDRIGYVQF PQRFEGIDPS DRYANHNTVF FDVNMRALDG
IMGPVYVGTG CLFRRIALYG FDPPRSKEHS GCCSCCFPQR RKVKTSTVAS EERQALRMAD
FDDEEMNMSQ FPKKFGNSNF LINSIPIAEF QGRPLADHPG VKNGRPPGAL TVPRDLLDAS
TVAEAISVIS CWYEDKTEWG QRVGWIYGSV TEDVVTGYRM HNRGWKSVYC VTKRDAFRGT
APINLTDRLH QVLRWATGSV EIFFSRNNAL LASRKMKFLQ RIAYLNVGIY PFTSIFLIVY
CFLPALSLFS GQFIVRTLNV TFLTYLLVIT LTMCMLAVLE IKWSGISLEE WWRNEQFWLI
GGTSAHLAAV LQGLLKVIAG IEISFTLTSK SGGDEADDEF ADLYIVKWTS LMIPPIVIMM
VNLIAIAVGF SRTIYSEIPQ WSKLLGGVFF SFWVLAHLYP FAKGLMGRRG RTPTIVFVWS
GLLAITISLL WVAINPPSQN SQIGGSFTFP