CSPE_ECOLI
ID CSPE_ECOLI Reviewed; 69 AA.
AC P0A972; P36997; P77103; P80434;
DT 19-JUL-2005, integrated into UniProtKB/Swiss-Prot.
DT 23-JAN-2007, sequence version 2.
DT 03-AUG-2022, entry version 121.
DE RecName: Full=Cold shock-like protein CspE;
DE Short=CSP-E;
GN Name=cspE; Synonyms=gicA, msmC; OrderedLocusNames=b0623, JW0618;
OS Escherichia coli (strain K12).
OC Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
OC Enterobacteriaceae; Escherichia.
OX NCBI_TaxID=83333;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC STRAIN=K12;
RX PubMed=7984109; DOI=10.1111/j.1365-2958.1994.tb00424.x;
RA Yamanaka K., Mitani T., Ogura T., Niki H., Hiraga S.;
RT "Cloning, sequencing, and characterization of multicopy suppressors of a
RT mukB mutation in Escherichia coli.";
RL Mol. Microbiol. 13:301-312(1994).
RN [2]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC STRAIN=K12 / W3110 / ATCC 27325 / DSM 5911;
RA Ramanathan Y., Narayanarao A.S.S., Mathur M., Mahajan S.K.;
RL Submitted (FEB-1994) to the EMBL/GenBank/DDBJ databases.
RN [3]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RX PubMed=8844142; DOI=10.1093/genetics/143.4.1521;
RA Hu K.H., Liu E., Dean K., Gingras M., Degraff W., Trun N.J.;
RT "Overproduction of three genes leads to camphor resistance and chromosome
RT condensation in Escherichia coli.";
RL Genetics 143:1521-1532(1996).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / MG1655 / ATCC 47076;
RA Chung E., Allen E., Araujo R., Aparicio A.M., Davis K., Duncan M.,
RA Federspiel N., Hyman R., Kalman S., Komp C., Kurdi O., Lew H., Lin D.,
RA Namath A., Oefner P., Roberts D., Schramm S., Davis R.W.;
RT "Sequence of minutes 4-25 of Escherichia coli.";
RL Submitted (JAN-1997) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / W3110 / ATCC 27325 / DSM 5911;
RX PubMed=8905232; DOI=10.1093/dnares/3.3.137;
RA Oshima T., Aiba H., Baba T., Fujita K., Hayashi K., Honjo A., Ikemoto K.,
RA Inada T., Itoh T., Kajihara M., Kanai K., Kashimoto K., Kimura S.,
RA Kitagawa M., Makino K., Masuda S., Miki T., Mizobuchi K., Mori H.,
RA Motomura K., Nakamura Y., Nashimoto H., Nishio Y., Saito N., Sampei G.,
RA Seki Y., Tagami H., Takemoto K., Wada C., Yamamoto Y., Yano M.,
RA Horiuchi T.;
RT "A 718-kb DNA sequence of the Escherichia coli K-12 genome corresponding to
RT the 12.7-28.0 min region on the linkage map.";
RL DNA Res. 3:137-155(1996).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / MG1655 / ATCC 47076;
RX PubMed=9278503; DOI=10.1126/science.277.5331.1453;
RA Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V.,
RA Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F.,
RA Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., Mau B.,
RA Shao Y.;
RT "The complete genome sequence of Escherichia coli K-12.";
RL Science 277:1453-1462(1997).
RN [7]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / W3110 / ATCC 27325 / DSM 5911;
RX PubMed=16738553; DOI=10.1038/msb4100049;
RA Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S.,
RA Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.;
RT "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655
RT and W3110.";
RL Mol. Syst. Biol. 2:E1-E5(2006).
RN [8]
RP PROTEIN SEQUENCE OF 2-46.
RC STRAIN=AD7333;
RA Liu K., Hanna M.M.;
RL Submitted (JUN-1995) to UniProtKB.
RN [9]
RP GENE NAME, AND GENE MAPPING.
RX PubMed=8022259; DOI=10.1111/j.1365-2958.1994.tb00359.x;
RA Jones P.G., Inouye M.;
RT "The cold-shock response -- a hot topic.";
RL Mol. Microbiol. 11:811-818(1994).
RN [10]
RP MASS SPECTROMETRY.
RC STRAIN=ATCC 15597;
RX PubMed=12071744; DOI=10.1021/ja025966k;
RA Reid G.E., Shang H., Hogan J.M., Lee G.U., McLuckey S.A.;
RT "Gas-phase concentration, purification, and identification of whole
RT proteins from complex mixtures.";
RL J. Am. Chem. Soc. 124:7353-7362(2002).
CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000250}.
CC -!- MASS SPECTROMETRY: Mass=7331; Method=Electrospray;
CC Evidence={ECO:0000269|PubMed:12071744};
CC -!- SEQUENCE CAUTION:
CC Sequence=AAB40823.1; Type=Erroneous initiation; Evidence={ECO:0000305};
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DR EMBL; D28497; BAA05856.1; -; Genomic_DNA.
DR EMBL; L29054; AAA67556.1; -; Genomic_DNA.
DR EMBL; S83396; AAN86720.1; -; Genomic_DNA.
DR EMBL; U82598; AAB40823.1; ALT_INIT; Genomic_DNA.
DR EMBL; U00096; AAC73724.1; -; Genomic_DNA.
DR EMBL; AP009048; BAA35266.1; -; Genomic_DNA.
DR PIR; S49050; S49050.
DR RefSeq; NP_415156.1; NC_000913.3.
DR RefSeq; WP_000034825.1; NZ_STEB01000031.1.
DR AlphaFoldDB; P0A972; -.
DR SMR; P0A972; -.
DR BioGRID; 4260642; 29.
DR DIP; DIP-47834N; -.
DR IntAct; P0A972; 49.
DR STRING; 511145.b0623; -.
DR jPOST; P0A972; -.
DR PaxDb; P0A972; -.
DR PRIDE; P0A972; -.
DR EnsemblBacteria; AAC73724; AAC73724; b0623.
DR EnsemblBacteria; BAA35266; BAA35266; BAA35266.
DR GeneID; 64171175; -.
DR GeneID; 67516440; -.
DR GeneID; 947024; -.
DR KEGG; ecj:JW0618; -.
DR KEGG; eco:b0623; -.
DR PATRIC; fig|1411691.4.peg.1645; -.
DR EchoBASE; EB2096; -.
DR eggNOG; COG1278; Bacteria.
DR HOGENOM; CLU_117621_2_1_6; -.
DR InParanoid; P0A972; -.
DR OMA; IWQKERG; -.
DR PhylomeDB; P0A972; -.
DR BioCyc; EcoCyc:EG12179-MON; -.
DR PRO; PR:P0A972; -.
DR Proteomes; UP000000318; Chromosome.
DR Proteomes; UP000000625; Chromosome.
DR GO; GO:0005829; C:cytosol; IDA:EcoCyc.
DR GO; GO:0003676; F:nucleic acid binding; IBA:GO_Central.
DR GO; GO:0008143; F:poly(A) binding; IDA:EcoCyc.
DR GO; GO:0003723; F:RNA binding; IDA:EcoliWiki.
DR GO; GO:0003697; F:single-stranded DNA binding; IDA:EcoCyc.
DR GO; GO:0001072; F:transcription antitermination factor activity, RNA binding; IDA:EcoliWiki.
DR GO; GO:0060567; P:negative regulation of DNA-templated transcription, termination; IDA:EcoliWiki.
DR GO; GO:0010468; P:regulation of gene expression; IBA:GO_Central.
DR GO; GO:0031564; P:transcription antitermination; IDA:EcoCyc.
DR CDD; cd04458; CSP_CDS; 1.
DR Gene3D; 2.40.50.140; -; 1.
DR InterPro; IPR012156; Cold_shock_CspA.
DR InterPro; IPR011129; CSD.
DR InterPro; IPR019844; CSD_1.
DR InterPro; IPR002059; CSP_DNA-bd.
DR InterPro; IPR012340; NA-bd_OB-fold.
DR Pfam; PF00313; CSD; 1.
DR PIRSF; PIRSF002599; Cold_shock_A; 1.
DR PRINTS; PR00050; COLDSHOCK.
DR SMART; SM00357; CSP; 1.
DR SUPFAM; SSF50249; SSF50249; 1.
DR PROSITE; PS00352; CSD_1; 1.
DR PROSITE; PS51857; CSD_2; 1.
PE 1: Evidence at protein level;
KW Activator; Cytoplasm; Direct protein sequencing; DNA-binding;
KW Reference proteome; Transcription; Transcription regulation.
FT INIT_MET 1
FT /note="Removed"
FT /evidence="ECO:0000269|Ref.8"
FT CHAIN 2..69
FT /note="Cold shock-like protein CspE"
FT /id="PRO_0000100253"
FT DOMAIN 6..66
FT /note="CSD"
FT CONFLICT 58
FT /note="A -> R (in Ref. 2)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 69 AA; 7463 MW; 1C33C920AA82405C CRC64;
MSKIKGNVKW FNESKGFGFI TPEDGSKDVF VHFSAIQTNG FKTLAEGQRV EFEITNGAKG
PSAANVIAL