CSPLD_ORYSJ
ID CSPLD_ORYSJ Reviewed; 194 AA.
AC Q67W83; A0A0P0WZT2;
DT 14-APR-2009, integrated into UniProtKB/Swiss-Prot.
DT 11-OCT-2004, sequence version 1.
DT 03-AUG-2022, entry version 86.
DE RecName: Full=CASP-like protein 2C1;
DE Short=OsCASPL2C1;
GN OrderedLocusNames=Os06g0656300, LOC_Os06g44610;
GN ORFNames=P0460H04.29, P0709F06.50;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [5]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=24920445; DOI=10.1104/pp.114.239137;
RA Roppolo D., Boeckmann B., Pfister A., Boutet E., Rubio M.C.,
RA Denervaud-Tendon V., Vermeer J.E., Gheyselinck J., Xenarios I., Geldner N.;
RT "Functional and evolutionary analysis of the CASPARIAN STRIP MEMBRANE
RT DOMAIN PROTEIN family.";
RL Plant Physiol. 165:1709-1722(2014).
CC -!- SUBUNIT: Homodimer and heterodimers. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Cell membrane {ECO:0000250}; Multi-pass membrane
CC protein {ECO:0000250}.
CC -!- SIMILARITY: Belongs to the Casparian strip membrane proteins (CASP)
CC family. {ECO:0000305}.
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DR EMBL; AP003579; BAD37569.1; -; Genomic_DNA.
DR EMBL; AP003712; BAD37586.1; -; Genomic_DNA.
DR EMBL; AP008212; BAF20165.1; -; Genomic_DNA.
DR EMBL; AP014962; BAS98941.1; -; Genomic_DNA.
DR EMBL; AK060123; BAG87329.1; -; mRNA.
DR EMBL; AK060127; BAG87332.1; -; mRNA.
DR RefSeq; XP_015641672.1; XM_015786186.1.
DR AlphaFoldDB; Q67W83; -.
DR SMR; Q67W83; -.
DR PaxDb; Q67W83; -.
DR PRIDE; Q67W83; -.
DR EnsemblPlants; Os06t0656300-01; Os06t0656300-01; Os06g0656300.
DR GeneID; 4341716; -.
DR Gramene; Os06t0656300-01; Os06t0656300-01; Os06g0656300.
DR KEGG; osa:4341716; -.
DR eggNOG; ENOG502S20T; Eukaryota.
DR HOGENOM; CLU_066104_0_0_1; -.
DR InParanoid; Q67W83; -.
DR OMA; YMTFATT; -.
DR OrthoDB; 1575732at2759; -.
DR Proteomes; UP000000763; Chromosome 6.
DR Proteomes; UP000059680; Chromosome 6.
DR Genevisible; Q67W83; OS.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0005886; C:plasma membrane; IBA:GO_Central.
DR GO; GO:0051539; F:4 iron, 4 sulfur cluster binding; IBA:GO_Central.
DR InterPro; IPR006459; CASP/CASPL.
DR InterPro; IPR006702; CASP_dom.
DR Pfam; PF04535; DUF588; 1.
DR TIGRFAMs; TIGR01569; A_tha_TIGR01569; 1.
PE 2: Evidence at transcript level;
KW Cell membrane; Membrane; Reference proteome; Transmembrane;
KW Transmembrane helix.
FT CHAIN 1..194
FT /note="CASP-like protein 2C1"
FT /id="PRO_0000370300"
FT TOPO_DOM 1..18
FT /note="Cytoplasmic"
FT /evidence="ECO:0000255"
FT TRANSMEM 19..39
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TOPO_DOM 40..59
FT /note="Extracellular"
FT /evidence="ECO:0000255"
FT TRANSMEM 60..80
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TOPO_DOM 81..109
FT /note="Cytoplasmic"
FT /evidence="ECO:0000255"
FT TRANSMEM 110..130
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TOPO_DOM 131..151
FT /note="Extracellular"
FT /evidence="ECO:0000255"
FT TRANSMEM 152..172
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TOPO_DOM 173..194
FT /note="Cytoplasmic"
FT /evidence="ECO:0000255"
SQ SEQUENCE 194 AA; 20672 MW; DC6A60CEC3F87CDA CRC64;
MSSYMEAAAA ARAAEAKTEG LLRGACALLA AAAALLVGLN TQTETVLFIR KKATVKDVQA
LWVLAMAAAA AAGYHLLQLL RCFYLSRFAD GKPCRHRRAI AWLCFLLDKG CAYITFATTV
AAAQACVVAL YGTHALQWTK LCNIYTRFCE QVAGSLVCAM LAAVGTALLS VVSARNLFRL
YPSMLSPPPS SFVG