CSPLE_ORYSJ
ID CSPLE_ORYSJ Reviewed; 198 AA.
AC Q0IN16; Q2QPX4;
DT 14-APR-2009, integrated into UniProtKB/Swiss-Prot.
DT 27-JUL-2011, sequence version 2.
DT 03-AUG-2022, entry version 66.
DE RecName: Full=CASP-like protein 2B1;
DE Short=OsCASPL2B1;
GN OrderedLocusNames=Os12g0514300, LOC_Os12g32970;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16188032; DOI=10.1186/1741-7007-3-20;
RG The rice chromosomes 11 and 12 sequencing consortia;
RT "The sequence of rice chromosomes 11 and 12, rich in disease resistance
RT genes and recent gene duplications.";
RL BMC Biol. 3:20-20(2005).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [6]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=24920445; DOI=10.1104/pp.114.239137;
RA Roppolo D., Boeckmann B., Pfister A., Boutet E., Rubio M.C.,
RA Denervaud-Tendon V., Vermeer J.E., Gheyselinck J., Xenarios I., Geldner N.;
RT "Functional and evolutionary analysis of the CASPARIAN STRIP MEMBRANE
RT DOMAIN PROTEIN family.";
RL Plant Physiol. 165:1709-1722(2014).
CC -!- SUBUNIT: Homodimer and heterodimers. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Cell membrane {ECO:0000250}; Multi-pass membrane
CC protein {ECO:0000250}.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=2;
CC Name=1;
CC IsoId=Q0IN16-1; Sequence=Displayed;
CC Name=2;
CC IsoId=Q0IN16-2; Sequence=VSP_041636;
CC -!- SIMILARITY: Belongs to the Casparian strip membrane proteins (CASP)
CC family. {ECO:0000305}.
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DR EMBL; DP000011; ABA99118.2; -; Genomic_DNA.
DR EMBL; AP008218; BAF29899.1; -; Genomic_DNA.
DR EMBL; AP014968; BAT17357.1; -; Genomic_DNA.
DR EMBL; AK062700; -; NOT_ANNOTATED_CDS; mRNA.
DR RefSeq; XP_015619442.1; XM_015763956.1. [Q0IN16-1]
DR AlphaFoldDB; Q0IN16; -.
DR SMR; Q0IN16; -.
DR PaxDb; Q0IN16; -.
DR PRIDE; Q0IN16; -.
DR EnsemblPlants; Os12t0514300-02; Os12t0514300-02; Os12g0514300. [Q0IN16-2]
DR GeneID; 4352337; -.
DR Gramene; Os12t0514300-02; Os12t0514300-02; Os12g0514300. [Q0IN16-2]
DR KEGG; osa:4352337; -.
DR InParanoid; Q0IN16; -.
DR Proteomes; UP000000763; Chromosome 12.
DR Proteomes; UP000059680; Chromosome 12.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0005886; C:plasma membrane; IBA:GO_Central.
DR GO; GO:0051539; F:4 iron, 4 sulfur cluster binding; IBA:GO_Central.
DR InterPro; IPR006459; CASP/CASPL.
DR InterPro; IPR006702; CASP_dom.
DR Pfam; PF04535; DUF588; 1.
DR TIGRFAMs; TIGR01569; A_tha_TIGR01569; 1.
PE 2: Evidence at transcript level;
KW Alternative splicing; Cell membrane; Membrane; Reference proteome;
KW Transmembrane; Transmembrane helix.
FT CHAIN 1..198
FT /note="CASP-like protein 2B1"
FT /id="PRO_0000370301"
FT TOPO_DOM 1..12
FT /note="Cytoplasmic"
FT /evidence="ECO:0000255"
FT TRANSMEM 13..33
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TOPO_DOM 34..55
FT /note="Extracellular"
FT /evidence="ECO:0000255"
FT TRANSMEM 56..76
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TOPO_DOM 77..91
FT /note="Cytoplasmic"
FT /evidence="ECO:0000255"
FT TRANSMEM 92..112
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TOPO_DOM 113..149
FT /note="Extracellular"
FT /evidence="ECO:0000255"
FT TRANSMEM 150..170
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TOPO_DOM 171..198
FT /note="Cytoplasmic"
FT /evidence="ECO:0000255"
FT VAR_SEQ 110..198
FT /note="LMAATAAALQSSVVGKRGQPELQWMPVCGLYGAFCRRVGEGLAAAVAAGLAA
FT VLLAAVSAFNLFRLYGGGGGGRKSSAGAVSGNGANTW -> PSPRASPPCSSPPSPRST
FT CSASTAAAAAAARAAPAPSPAMARTRGRQG (in isoform 2)"
FT /evidence="ECO:0000303|PubMed:12869764"
FT /id="VSP_041636"
SQ SEQUENCE 198 AA; 19759 MW; E8B5317CFCFB6FC2 CRC64;
MAAAMGLERK AKVAEVALRC AVCALAALAA ALVGTGSQTR TFFSLEKKAR FTDMKALVLL
VAAHGAAAVY SLLQLARCAA AAAWKGGSNG GAAVVAWSVF SCDQAVAYAL MAATAAALQS
SVVGKRGQPE LQWMPVCGLY GAFCRRVGEG LAAAVAAGLA AVLLAAVSAF NLFRLYGGGG
GGRKSSAGAV SGNGANTW
