CSPLH_MAIZE
ID CSPLH_MAIZE Reviewed; 159 AA.
AC B6U300;
DT 05-SEP-2012, integrated into UniProtKB/Swiss-Prot.
DT 05-SEP-2012, sequence version 2.
DT 25-MAY-2022, entry version 55.
DE RecName: Full=CASP-like protein 5C1;
DE Short=ZmCASPL5C1;
OS Zea mays (Maize).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade;
OC Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea.
OX NCBI_TaxID=4577;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 2).
RC TISSUE=Flower, and Root;
RX PubMed=18937034; DOI=10.1007/s11103-008-9415-4;
RA Alexandrov N.N., Brover V.V., Freidin S., Troukhan M.E., Tatarinova T.V.,
RA Zhang H., Swaller T.J., Lu Y.-P., Bouck J., Flavell R.B., Feldmann K.A.;
RT "Insights into corn genes derived from large-scale cDNA sequencing.";
RL Plant Mol. Biol. 69:179-194(2009).
RN [2]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=24920445; DOI=10.1104/pp.114.239137;
RA Roppolo D., Boeckmann B., Pfister A., Boutet E., Rubio M.C.,
RA Denervaud-Tendon V., Vermeer J.E., Gheyselinck J., Xenarios I., Geldner N.;
RT "Functional and evolutionary analysis of the CASPARIAN STRIP MEMBRANE
RT DOMAIN PROTEIN family.";
RL Plant Physiol. 165:1709-1722(2014).
CC -!- SUBUNIT: Homodimer and heterodimers. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Cell membrane {ECO:0000250}; Multi-pass membrane
CC protein {ECO:0000250}.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=2;
CC Name=1;
CC IsoId=B6U300-1; Sequence=Displayed;
CC Name=2;
CC IsoId=B6U300-2; Sequence=VSP_044078;
CC -!- SIMILARITY: Belongs to the Casparian strip membrane proteins (CASP)
CC family. {ECO:0000305}.
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DR EMBL; EU971615; ACG43733.1; -; mRNA.
DR EMBL; FL249491; -; NOT_ANNOTATED_CDS; mRNA.
DR RefSeq; NP_001144895.1; NM_001151423.1.
DR RefSeq; XP_008671839.1; XM_008673617.1. [B6U300-1]
DR AlphaFoldDB; B6U300; -.
DR PaxDb; B6U300; -.
DR EnsemblPlants; Zm00001eb058720_T003; Zm00001eb058720_P003; Zm00001eb058720. [B6U300-1]
DR GeneID; 100278000; -.
DR Gramene; Zm00001eb058720_T003; Zm00001eb058720_P003; Zm00001eb058720. [B6U300-1]
DR eggNOG; ENOG502RYBF; Eukaryota.
DR HOGENOM; CLU_103961_1_0_1; -.
DR OMA; WNLTLAM; -.
DR OrthoDB; 1505699at2759; -.
DR Proteomes; UP000007305; Chromosome 1.
DR ExpressionAtlas; B6U300; baseline and differential.
DR Genevisible; B6U300; ZM.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0016020; C:membrane; IBA:GO_Central.
DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell.
DR InterPro; IPR006702; CASP_dom.
DR InterPro; IPR045009; CASPL-5.
DR PANTHER; PTHR32021; PTHR32021; 1.
DR Pfam; PF04535; DUF588; 1.
PE 2: Evidence at transcript level;
KW Alternative splicing; Cell membrane; Membrane; Reference proteome;
KW Transmembrane; Transmembrane helix.
FT CHAIN 1..159
FT /note="CASP-like protein 5C1"
FT /id="PRO_0000418698"
FT TOPO_DOM 1..6
FT /note="Cytoplasmic"
FT /evidence="ECO:0000255"
FT TRANSMEM 7..29
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TOPO_DOM 30..48
FT /note="Extracellular"
FT /evidence="ECO:0000255"
FT TRANSMEM 49..69
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TOPO_DOM 70..94
FT /note="Cytoplasmic"
FT /evidence="ECO:0000255"
FT TRANSMEM 95..117
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TOPO_DOM 118..134
FT /note="Extracellular"
FT /evidence="ECO:0000255"
FT TRANSMEM 135..155
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TOPO_DOM 156..159
FT /note="Cytoplasmic"
FT /evidence="ECO:0000255"
FT VAR_SEQ 62
FT /note="W -> LEA (in isoform 2)"
FT /evidence="ECO:0000303|PubMed:18937034"
FT /id="VSP_044078"
SQ SEQUENCE 159 AA; 16659 MW; 77510719082E208E CRC64;
MDNGDRSGAG AGAVGSAGSL GLRVGQAVFS SASLLFMSVG VEFFSYTAFC FLVTIMGLVI
PWSCTLAMID VYSVFVGCPL RVPGVMVIVV VGDCALSIVS FAAACSSAAV IDLLLQLHGS
HSSPTFCGRY QLSAMMAFLS WLLMAASATF NLWFVASRW