CSPLV_ARATH
ID CSPLV_ARATH Reviewed; 270 AA.
AC Q9FNE8;
DT 23-OCT-2007, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2001, sequence version 1.
DT 03-AUG-2022, entry version 102.
DE RecName: Full=CASP-like protein 4A1;
DE Short=AtCASPL4A1;
GN OrderedLocusNames=At5g40300; ORFNames=MPO12.1;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=9405937; DOI=10.1093/dnares/4.4.291;
RA Kotani H., Nakamura Y., Sato S., Kaneko T., Asamizu E., Miyajima N.,
RA Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. II. Sequence
RT features of the regions of 1,044,062 bp covered by thirteen physically
RT assigned P1 clones.";
RL DNA Res. 4:291-300(1997).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Shinn P., Chen H., Cheuk R.F., Kim C.J., Ecker J.R.;
RT "Arabidopsis ORF clones.";
RL Submitted (MAR-2004) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=24920445; DOI=10.1104/pp.114.239137;
RA Roppolo D., Boeckmann B., Pfister A., Boutet E., Rubio M.C.,
RA Denervaud-Tendon V., Vermeer J.E., Gheyselinck J., Xenarios I., Geldner N.;
RT "Functional and evolutionary analysis of the CASPARIAN STRIP MEMBRANE
RT DOMAIN PROTEIN family.";
RL Plant Physiol. 165:1709-1722(2014).
CC -!- SUBUNIT: Homodimer and heterodimers. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Cell membrane {ECO:0000250}; Multi-pass membrane
CC protein {ECO:0000250}.
CC -!- SIMILARITY: Belongs to the Casparian strip membrane proteins (CASP)
CC family. {ECO:0000305}.
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DR EMBL; AB006702; BAB11584.1; -; Genomic_DNA.
DR EMBL; CP002688; AED94531.1; -; Genomic_DNA.
DR EMBL; BT010719; AAR20776.1; -; mRNA.
DR EMBL; BT011792; AAS68116.1; -; mRNA.
DR RefSeq; NP_198846.1; NM_123394.4.
DR AlphaFoldDB; Q9FNE8; -.
DR BioGRID; 19279; 2.
DR IntAct; Q9FNE8; 2.
DR STRING; 3702.AT5G40300.1; -.
DR iPTMnet; Q9FNE8; -.
DR PaxDb; Q9FNE8; -.
DR PRIDE; Q9FNE8; -.
DR ProteomicsDB; 222712; -.
DR EnsemblPlants; AT5G40300.1; AT5G40300.1; AT5G40300.
DR GeneID; 834028; -.
DR Gramene; AT5G40300.1; AT5G40300.1; AT5G40300.
DR KEGG; ath:AT5G40300; -.
DR Araport; AT5G40300; -.
DR TAIR; locus:2170603; AT5G40300.
DR eggNOG; ENOG502QW75; Eukaryota.
DR HOGENOM; CLU_048961_2_0_1; -.
DR InParanoid; Q9FNE8; -.
DR OMA; MENCQVR; -.
DR OrthoDB; 1502083at2759; -.
DR PhylomeDB; Q9FNE8; -.
DR PRO; PR:Q9FNE8; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q9FNE8; baseline and differential.
DR Genevisible; Q9FNE8; AT.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell.
DR GO; GO:0051539; F:4 iron, 4 sulfur cluster binding; IBA:GO_Central.
DR InterPro; IPR006702; CASP_dom.
DR Pfam; PF04535; DUF588; 1.
PE 2: Evidence at transcript level;
KW Cell membrane; Membrane; Reference proteome; Transmembrane;
KW Transmembrane helix.
FT CHAIN 1..270
FT /note="CASP-like protein 4A1"
FT /id="PRO_0000308686"
FT TOPO_DOM 1..121
FT /note="Cytoplasmic"
FT /evidence="ECO:0000255"
FT TRANSMEM 122..142
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TOPO_DOM 143..161
FT /note="Extracellular"
FT /evidence="ECO:0000255"
FT TRANSMEM 162..182
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TOPO_DOM 183..198
FT /note="Cytoplasmic"
FT /evidence="ECO:0000255"
FT TRANSMEM 199..221
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TOPO_DOM 222..246
FT /note="Extracellular"
FT /evidence="ECO:0000255"
FT TRANSMEM 247..267
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TOPO_DOM 268..270
FT /note="Cytoplasmic"
FT /evidence="ECO:0000255"
FT REGION 1..110
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1..20
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 21..80
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 82..97
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 270 AA; 30299 MW; C4E680BED69F4CED CRC64;
MEELEKTQKF QKKKKQQQEK QDQSSPINFE MSSRSSLHSL PQTTIESPPD SPTLSSIPDS
HGSSPHTIIP TPSVAKTETP FRVTNGEEEK KVSESRRQLR PSFSSSSSTP RESKWASLIR
KALLGFRVIA FVSCLVSFSV MVSDRDKGWA HDSFYNYKEF RFCLAANVIG FVYSGFMICD
LVYLLSTSIR RSRHNLRHFL EFGLDQMLAY LLASASTSAS IRVDDWQSNW GADKFPDLAR
ASVALSYVSF VAFAFCSLAS GYALCALRSI