CUTA1_ORYSJ
ID CUTA1_ORYSJ Reviewed; 177 AA.
AC Q109R6; A0A0P0XTW7; Q0IY21;
DT 03-NOV-2009, integrated into UniProtKB/Swiss-Prot.
DT 22-AUG-2006, sequence version 1.
DT 03-AUG-2022, entry version 78.
DE RecName: Full=Protein CutA 1, chloroplastic;
DE Short=OsCutA1;
DE Flags: Precursor;
GN Name=CUTA1; OrderedLocusNames=Os10g0378300, LOC_Os10g23204;
GN ORFNames=OsJ_31315;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12791992; DOI=10.1126/science.1083523;
RA Yu Y., Rambo T., Currie J., Saski C., Kim H.-R., Collura K., Thompson S.,
RA Simmons J., Yang T.-J., Nah G., Patel A.J., Thurmond S., Henry D.,
RA Oates R., Palmer M., Pries G., Gibson J., Anderson H., Paradkar M.,
RA Crane L., Dale J., Carver M.B., Wood T., Frisch D., Engler F.,
RA Soderlund C., Palmer L.E., Teytelman L., Nascimento L., De la Bastide M.,
RA Spiegel L., Ware D., O'Shaughnessy A., Dike S., Dedhia N., Preston R.,
RA Huang E., Ferraro K., Kuit K., Miller B., Zutavern T., Katzenberger F.,
RA Muller S., Balija V., Martienssen R.A., Stein L., Minx P., Johnson D.,
RA Cordum H., Mardis E., Cheng Z., Jiang J., Wilson R., McCombie W.R.,
RA Wing R.A., Yuan Q., Ouyang S., Liu J., Jones K.M., Gansberger K.,
RA Moffat K., Hill J., Tsitrin T., Overton L., Bera J., Kim M., Jin S.,
RA Tallon L., Ciecko A., Pai G., Van Aken S., Utterback T., Reidmuller S.,
RA Bormann J., Feldblyum T., Hsiao J., Zismann V., Blunt S., de Vazeille A.R.,
RA Shaffer T., Koo H., Suh B., Yang Q., Haas B., Peterson J., Pertea M.,
RA Volfovsky N., Wortman J., White O., Salzberg S.L., Fraser C.M., Buell C.R.,
RA Messing J., Song R., Fuks G., Llaca V., Kovchak S., Young S., Bowers J.E.,
RA Paterson A.H., Johns M.A., Mao L., Pan H., Dean R.A.;
RT "In-depth view of structure, activity, and evolution of rice chromosome
RT 10.";
RL Science 300:1566-1569(2003).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [7]
RP X-RAY CRYSTALLOGRAPHY (3.02 ANGSTROMS) OF 65-177, AND TRIMERIZATION.
RX PubMed=18154307; DOI=10.1021/bi701761m;
RA Sawano M., Yamamoto H., Ogasahara K., Kidokoro S., Katoh S., Ohnuma T.,
RA Katoh E., Yokoyama S., Yutani K.;
RT "Thermodynamic basis for the stabilities of three CutA1s from Pyrococcus
RT horikoshii, Thermus thermophilus, and Oryza sativa, with unusually high
RT denaturation temperatures.";
RL Biochemistry 47:721-730(2008).
CC -!- SUBUNIT: Homotrimer.
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the CutA family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAF26394.1; Type=Erroneous initiation; Evidence={ECO:0000305};
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DR EMBL; DP000086; ABG66054.1; -; Genomic_DNA.
DR EMBL; AP008216; BAF26394.1; ALT_INIT; Genomic_DNA.
DR EMBL; AP014966; BAT10611.1; -; Genomic_DNA.
DR EMBL; CM000147; EEE50864.1; -; Genomic_DNA.
DR EMBL; AK102858; -; NOT_ANNOTATED_CDS; mRNA.
DR PDB; 2ZOM; X-ray; 3.02 A; A/B/C=65-177.
DR PDBsum; 2ZOM; -.
DR AlphaFoldDB; Q109R6; -.
DR SMR; Q109R6; -.
DR STRING; 4530.OS10T0378300-01; -.
DR PaxDb; Q109R6; -.
DR PRIDE; Q109R6; -.
DR EnsemblPlants; Os10t0378300-01; Os10t0378300-01; Os10g0378300.
DR Gramene; Os10t0378300-01; Os10t0378300-01; Os10g0378300.
DR eggNOG; KOG3338; Eukaryota.
DR HOGENOM; CLU_098807_0_0_1; -.
DR InParanoid; Q109R6; -.
DR OMA; RMEGNTN; -.
DR EvolutionaryTrace; Q109R6; -.
DR Proteomes; UP000000763; Chromosome 10.
DR Proteomes; UP000007752; Chromosome 10.
DR Proteomes; UP000059680; Chromosome 10.
DR ExpressionAtlas; Q109R6; baseline and differential.
DR Genevisible; Q109R6; OS.
DR GO; GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.
DR GO; GO:0005507; F:copper ion binding; IBA:GO_Central.
DR GO; GO:0070207; P:protein homotrimerization; IPI:UniProtKB.
DR GO; GO:0010038; P:response to metal ion; IEA:InterPro.
DR Gene3D; 3.30.70.120; -; 1.
DR InterPro; IPR004323; Ion_tolerance_CutA.
DR InterPro; IPR011322; N-reg_PII-like_a/b.
DR InterPro; IPR015867; N-reg_PII/ATP_PRibTrfase_C.
DR PANTHER; PTHR23419; PTHR23419; 1.
DR Pfam; PF03091; CutA1; 1.
DR SUPFAM; SSF54913; SSF54913; 1.
PE 1: Evidence at protein level;
KW 3D-structure; Chloroplast; Plastid; Reference proteome; Transit peptide.
FT TRANSIT 1..60
FT /note="Chloroplast"
FT /evidence="ECO:0000255"
FT CHAIN 61..177
FT /note="Protein CutA 1, chloroplastic"
FT /id="PRO_0000387497"
FT STRAND 74..83
FT /evidence="ECO:0007829|PDB:2ZOM"
FT HELIX 84..96
FT /evidence="ECO:0007829|PDB:2ZOM"
FT STRAND 101..115
FT /evidence="ECO:0007829|PDB:2ZOM"
FT STRAND 118..132
FT /evidence="ECO:0007829|PDB:2ZOM"
FT HELIX 133..135
FT /evidence="ECO:0007829|PDB:2ZOM"
FT HELIX 136..145
FT /evidence="ECO:0007829|PDB:2ZOM"
FT STRAND 148..151
FT /evidence="ECO:0007829|PDB:2ZOM"
FT STRAND 155..158
FT /evidence="ECO:0007829|PDB:2ZOM"
FT HELIX 164..173
FT /evidence="ECO:0007829|PDB:2ZOM"
SQ SEQUENCE 177 AA; 18775 MW; 5D742D87DF682723 CRC64;
MPLLPSPLGS LSAAATAAPR RAAAAAGLSP LLLRRRAPIA GALLFLSLGA FAGVRSLSSS
ASARMESTST TVPSIVVYVT VPNKEAGKRL AGSIISEKLA ACVNIVPGIE SVYWWEGKVQ
TDAEELLIIK TRESLLDALT EHVKANHEYD VPEVIALPIK GGNLKYLEWL KNSTRES
