CX5BL_ARATH
ID CX5BL_ARATH Reviewed; 90 AA.
AC Q9SSS5; F4IEJ9; Q8GW54;
DT 21-SEP-2011, integrated into UniProtKB/Swiss-Prot.
DT 21-SEP-2011, sequence version 2.
DT 03-AUG-2022, entry version 95.
DE RecName: Full=Putative cytochrome c oxidase subunit 5b-like;
GN OrderedLocusNames=At1g52710; ORFNames=F6D8.4;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
RC STRAIN=cv. Columbia;
RX PubMed=11910074; DOI=10.1126/science.1071006;
RA Seki M., Narusaka M., Kamiya A., Ishida J., Satou M., Sakurai T.,
RA Nakajima M., Enju A., Akiyama K., Oono Y., Muramatsu M., Hayashizaki Y.,
RA Kawai J., Carninci P., Itoh M., Ishii Y., Arakawa T., Shibata K.,
RA Shinagawa A., Shinozaki K.;
RT "Functional annotation of a full-length Arabidopsis cDNA collection.";
RL Science 296:141-145(2002).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
RC STRAIN=cv. Columbia; TISSUE=Silique;
RX PubMed=14993207; DOI=10.1101/gr.1515604;
RA Castelli V., Aury J.-M., Jaillon O., Wincker P., Clepet C., Menard M.,
RA Cruaud C., Quetier F., Scarpelli C., Schaechter V., Temple G., Caboche M.,
RA Weissenbach J., Salanoubat M.;
RT "Whole genome sequence comparisons and 'full-length' cDNA sequences: a
RT combined approach to evaluate and improve Arabidopsis genome annotation.";
RL Genome Res. 14:406-413(2004).
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=2;
CC Name=1;
CC IsoId=Q9SSS5-1; Sequence=Displayed;
CC Name=2;
CC IsoId=Q9SSS5-2; Sequence=VSP_041683;
CC -!- SIMILARITY: Belongs to the cytochrome c oxidase subunit 5B (TC
CC 3.D.4.11) family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAD55594.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AC008016; AAD55594.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002684; AEE32842.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE32843.1; -; Genomic_DNA.
DR EMBL; AK119073; BAC43649.1; -; mRNA.
DR EMBL; BX841959; -; NOT_ANNOTATED_CDS; mRNA.
DR RefSeq; NP_001185205.1; NM_001198276.2. [Q9SSS5-2]
DR RefSeq; NP_175680.2; NM_104149.2. [Q9SSS5-1]
DR AlphaFoldDB; Q9SSS5; -.
DR SMR; Q9SSS5; -.
DR STRING; 3702.AT1G52710.1; -.
DR PaxDb; Q9SSS5; -.
DR PRIDE; Q9SSS5; -.
DR EnsemblPlants; AT1G52710.1; AT1G52710.1; AT1G52710. [Q9SSS5-1]
DR EnsemblPlants; AT1G52710.2; AT1G52710.2; AT1G52710. [Q9SSS5-2]
DR GeneID; 841704; -.
DR Gramene; AT1G52710.1; AT1G52710.1; AT1G52710. [Q9SSS5-1]
DR Gramene; AT1G52710.2; AT1G52710.2; AT1G52710. [Q9SSS5-2]
DR KEGG; ath:AT1G52710; -.
DR Araport; AT1G52710; -.
DR TAIR; locus:2035069; AT1G52710.
DR eggNOG; KOG3352; Eukaryota.
DR HOGENOM; CLU_127178_3_0_1; -.
DR InParanoid; Q9SSS5; -.
DR OMA; RECYVEA; -.
DR OrthoDB; 1528134at2759; -.
DR PRO; PR:Q9SSS5; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9SSS5; baseline and differential.
DR Genevisible; Q9SSS5; AT.
DR GO; GO:0005751; C:mitochondrial respiratory chain complex IV; IEA:InterPro.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0006123; P:mitochondrial electron transport, cytochrome c to oxygen; IBA:GO_Central.
DR Gene3D; 2.60.11.10; -; 1.
DR InterPro; IPR002124; Cyt_c_oxidase_su5b.
DR InterPro; IPR036972; Cyt_c_oxidase_su5b_sf.
DR PANTHER; PTHR10122; PTHR10122; 1.
DR Pfam; PF01215; COX5B; 1.
DR PROSITE; PS51359; COX5B_2; 1.
PE 3: Inferred from homology;
KW Alternative splicing; Metal-binding; Reference proteome; Zinc.
FT CHAIN 1..90
FT /note="Putative cytochrome c oxidase subunit 5b-like"
FT /id="PRO_0000412473"
FT BINDING 43
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00692"
FT BINDING 67
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00692"
FT BINDING 70
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00692"
FT VAR_SEQ 8..90
FT /note="YSGRRLLDIDHPESPFGTKESPAVVQSYFDKRNIGCRGGEGEDGHDVVWFWL
FT DKGKSFECPVCSQYFEHGPPDGHGDDEDHHH -> EGGCLTSTTLKVLLVQRNLLLSYS
FT PTLTREISDAVVVKARMDTTSFGSG (in isoform 2)"
FT /evidence="ECO:0000303|PubMed:11910074,
FT ECO:0000303|PubMed:14993207"
FT /id="VSP_041683"
SQ SEQUENCE 90 AA; 10300 MW; 7D47005962D9147D CRC64;
MIRLDKEYSG RRLLDIDHPE SPFGTKESPA VVQSYFDKRN IGCRGGEGED GHDVVWFWLD
KGKSFECPVC SQYFEHGPPD GHGDDEDHHH
