CY552_BRADU
ID CY552_BRADU Reviewed; 104 AA.
AC P24059; P30965;
DT 01-MAR-1992, integrated into UniProtKB/Swiss-Prot.
DT 01-NOV-1997, sequence version 2.
DT 03-AUG-2022, entry version 132.
DE RecName: Full=Cytochrome c-552;
DE AltName: Full=Cytochrome c552;
DE Flags: Precursor;
GN Name=cycB; OrderedLocusNames=blr6128;
OS Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 /
OS NBRC 14792 / USDA 110).
OC Bacteria; Proteobacteria; Alphaproteobacteria; Hyphomicrobiales;
OC Bradyrhizobiaceae; Bradyrhizobium.
OX NCBI_TaxID=224911;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC STRAIN=USDA 110spc4;
RX PubMed=1663888; DOI=10.1016/0378-1097(91)90345-b;
RA Rossbach S., Loferer H., Acuna G., Appleby C.A., Hennecke H.;
RT "Cloning, sequencing and mutational analysis of the cytochrome c552 gene
RT (cycB) from Bradyrhizobium japonicum strain 110.";
RL FEMS Microbiol. Lett. 67:145-152(1991).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110;
RX PubMed=12597275; DOI=10.1093/dnares/9.6.189;
RA Kaneko T., Nakamura Y., Sato S., Minamisawa K., Uchiumi T., Sasamoto S.,
RA Watanabe A., Idesawa K., Iriguchi M., Kawashima K., Kohara M.,
RA Matsumoto M., Shimpo S., Tsuruoka H., Wada T., Yamada M., Tabata S.;
RT "Complete genomic sequence of nitrogen-fixing symbiotic bacterium
RT Bradyrhizobium japonicum USDA110.";
RL DNA Res. 9:189-197(2002).
RN [3]
RP PROTEIN SEQUENCE OF 24-104.
RC STRAIN=CC705 / UW505;
RX PubMed=1663887; DOI=10.1016/0378-1097(91)90344-a;
RA Appleby C.A., James P., Hennecke H.;
RT "Characterization of three soluble c-type cytochromes isolated from soybean
RT root nodule bacteroids of Bradyrhizobium japonicum strain CC705.";
RL FEMS Microbiol. Lett. 67:137-144(1991).
CC -!- SUBUNIT: Monoheme monomer. Has the tendency to dimerize.
CC -!- SUBCELLULAR LOCATION: Periplasm.
CC -!- PTM: Binds 1 heme c group covalently per subunit.
CC -!- SIMILARITY: Belongs to the cytochrome c family. {ECO:0000305}.
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DR EMBL; X60354; CAA42914.1; -; Genomic_DNA.
DR EMBL; BA000040; BAC51393.1; -; Genomic_DNA.
DR PIR; S18821; S18821.
DR RefSeq; NP_772768.1; NC_004463.1.
DR RefSeq; WP_011088869.1; NZ_CP011360.1.
DR AlphaFoldDB; P24059; -.
DR SMR; P24059; -.
DR STRING; 224911.27354406; -.
DR EnsemblBacteria; BAC51393; BAC51393; BAC51393.
DR GeneID; 64025889; -.
DR KEGG; bja:blr6128; -.
DR PATRIC; fig|224911.44.peg.6088; -.
DR eggNOG; COG2010; Bacteria.
DR HOGENOM; CLU_133116_1_1_5; -.
DR OMA; FFLLDPH; -.
DR PhylomeDB; P24059; -.
DR Proteomes; UP000002526; Chromosome.
DR GO; GO:0042597; C:periplasmic space; IEA:UniProtKB-SubCell.
DR GO; GO:0009055; F:electron transfer activity; IEA:InterPro.
DR GO; GO:0020037; F:heme binding; IEA:InterPro.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0009399; P:nitrogen fixation; IEA:UniProtKB-KW.
DR Gene3D; 1.10.760.10; -; 1.
DR InterPro; IPR009056; Cyt_c-like_dom.
DR InterPro; IPR036909; Cyt_c-like_dom_sf.
DR Pfam; PF13442; Cytochrome_CBB3; 1.
DR SUPFAM; SSF46626; SSF46626; 1.
DR PROSITE; PS51007; CYTC; 1.
PE 1: Evidence at protein level;
KW Direct protein sequencing; Electron transport; Heme; Iron; Metal-binding;
KW Nitrogen fixation; Periplasm; Reference proteome; Signal; Transport.
FT SIGNAL 1..23
FT /evidence="ECO:0000269|PubMed:1663887"
FT CHAIN 24..104
FT /note="Cytochrome c-552"
FT /id="PRO_0000006530"
FT BINDING 37
FT /ligand="heme c"
FT /ligand_id="ChEBI:CHEBI:61717"
FT /note="covalent"
FT BINDING 40
FT /ligand="heme c"
FT /ligand_id="ChEBI:CHEBI:61717"
FT /note="covalent"
FT BINDING 41
FT /ligand="heme c"
FT /ligand_id="ChEBI:CHEBI:61717"
FT /ligand_part="Fe"
FT /ligand_part_id="ChEBI:CHEBI:18248"
FT /note="axial binding residue"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00433"
FT BINDING 82
FT /ligand="heme c"
FT /ligand_id="ChEBI:CHEBI:61717"
FT /ligand_part="Fe"
FT /ligand_part_id="ChEBI:CHEBI:18248"
FT /note="axial binding residue"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00433"
FT VARIANT 25
FT /note="D -> N (in strain: CC705 / UW505)"
FT VARIANT 27
FT /note="G -> E (in strain: CC705 / UW505)"
FT VARIANT 48..49
FT /note="AV -> TQ (in strain: CC705 / UW505)"
FT VARIANT 60
FT /note="V -> F (in strain: CC705 / UW505)"
FT VARIANT 63
FT /note="Missing (in strain: CC705 / UW505)"
FT VARIANT 68
FT /note="S -> P (in strain: CC705 / UW505)"
FT VARIANT 70..74
FT /note="Missing (in strain: CC705 / UW505)"
FT VARIANT 84
FT /note="S -> N (in strain: CC705 / UW505)"
FT VARIANT 100
FT /note="G -> A (in strain: CC705 / UW505)"
FT VARIANT 103..104
FT /note="Missing (in strain: CC705 / UW505)"
SQ SEQUENCE 104 AA; 10844 MW; AB1713A7F106E661 CRC64;
MHLHLRGICL VLAVASSSSS ALAADAGHGA DLAKRWCASC HVVANGQAVA SADVPSFASV
ARRPDFSSEK LAFFLLDPHP KMPSFPLSRT EAGDIAAYIG SLRP
