CY552_NITEU
ID CY552_NITEU Reviewed; 103 AA.
AC P95339;
DT 15-DEC-1998, integrated into UniProtKB/Swiss-Prot.
DT 16-MAY-2003, sequence version 2.
DT 03-AUG-2022, entry version 135.
DE RecName: Full=Cytochrome c-552;
DE AltName: Full=Cytochrome c-551;
DE AltName: Full=Cytochrome c552;
DE Flags: Precursor;
GN Name=cyt; Synonyms=cyt_c552; OrderedLocusNames=NE0102;
OS Nitrosomonas europaea (strain ATCC 19718 / CIP 103999 / KCTC 2705 / NBRC
OS 14298).
OC Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales;
OC Nitrosomonadaceae; Nitrosomonas.
OX NCBI_TaxID=228410;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA], AND STRUCTURE BY NMR.
RC STRAIN=ATCC 19718 / CIP 103999 / KCTC 2705 / NBRC 14298;
RX PubMed=9746537; DOI=10.1016/s0006-3495(98)77637-4;
RA Timkovich R., Bergmann D., Arciero D.M., Hooper A.B.;
RT "Primary sequence and solution conformation of ferrocytochrome c-552 from
RT Nitrosomonas europaea.";
RL Biophys. J. 75:1964-1972(1998).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 19718 / CIP 103999 / KCTC 2705 / NBRC 14298;
RX PubMed=12700255; DOI=10.1128/jb.185.9.2759-2773.2003;
RA Chain P., Lamerdin J.E., Larimer F.W., Regala W., Lao V., Land M.L.,
RA Hauser L., Hooper A.B., Klotz M.G., Norton J., Sayavedra-Soto L.A.,
RA Arciero D.M., Hommes N.G., Whittaker M.M., Arp D.J.;
RT "Complete genome sequence of the ammonia-oxidizing bacterium and obligate
RT chemolithoautotroph Nitrosomonas europaea.";
RL J. Bacteriol. 185:2759-2773(2003).
CC -!- FUNCTION: Monoheme c-type cytochrome. Probable electron donor to
CC membrane cytochrome oxidase and to periplasmic nitrite reductase.
CC -!- SUBUNIT: Monomer.
CC -!- SUBCELLULAR LOCATION: Periplasm.
CC -!- PTM: Binds 1 heme c group covalently per subunit.
CC -!- SEQUENCE CAUTION:
CC Sequence=CAD84013.1; Type=Erroneous initiation; Evidence={ECO:0000305};
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DR EMBL; U86756; AAB46987.1; -; Genomic_DNA.
DR EMBL; AL954747; CAD84013.1; ALT_INIT; Genomic_DNA.
DR RefSeq; WP_041356284.1; NC_004757.1.
DR PDB; 1A56; NMR; -; A=23-103.
DR PDB; 1A8C; NMR; -; A=23-103.
DR PDB; 3ZOW; X-ray; 2.35 A; A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P/Q/R=23-103.
DR PDB; 3ZOX; X-ray; 2.10 A; A/B/C/D=23-103.
DR PDB; 3ZOY; X-ray; 2.30 A; A/B/C/D=23-103.
DR PDB; 4JCG; X-ray; 1.63 A; A=23-103.
DR PDBsum; 1A56; -.
DR PDBsum; 1A8C; -.
DR PDBsum; 3ZOW; -.
DR PDBsum; 3ZOX; -.
DR PDBsum; 3ZOY; -.
DR PDBsum; 4JCG; -.
DR AlphaFoldDB; P95339; -.
DR SMR; P95339; -.
DR STRING; 228410.NE0102; -.
DR EnsemblBacteria; CAD84013; CAD84013; NE0102.
DR KEGG; neu:NE0102; -.
DR eggNOG; COG4654; Bacteria.
DR HOGENOM; CLU_133112_1_0_4; -.
DR OMA; MGCHQVD; -.
DR OrthoDB; 1939800at2; -.
DR EvolutionaryTrace; P95339; -.
DR Proteomes; UP000001416; Chromosome.
DR GO; GO:0042597; C:periplasmic space; IEA:UniProtKB-SubCell.
DR GO; GO:0009055; F:electron transfer activity; IEA:InterPro.
DR GO; GO:0020037; F:heme binding; IEA:InterPro.
DR GO; GO:0005506; F:iron ion binding; IEA:InterPro.
DR Gene3D; 1.10.760.10; -; 1.
DR InterPro; IPR009056; Cyt_c-like_dom.
DR InterPro; IPR036909; Cyt_c-like_dom_sf.
DR InterPro; IPR002324; Cyt_c_ID.
DR Pfam; PF00034; Cytochrom_C; 1.
DR PRINTS; PR00606; CYTCHROMECID.
DR SUPFAM; SSF46626; SSF46626; 1.
DR PROSITE; PS51007; CYTC; 1.
PE 1: Evidence at protein level;
KW 3D-structure; Electron transport; Heme; Iron; Metal-binding; Periplasm;
KW Reference proteome; Signal; Transport.
FT SIGNAL 1..22
FT CHAIN 23..103
FT /note="Cytochrome c-552"
FT /id="PRO_0000006532"
FT BINDING 32
FT /ligand="heme c"
FT /ligand_id="ChEBI:CHEBI:61717"
FT /note="covalent"
FT BINDING 35
FT /ligand="heme c"
FT /ligand_id="ChEBI:CHEBI:61717"
FT /note="covalent"
FT BINDING 36
FT /ligand="heme c"
FT /ligand_id="ChEBI:CHEBI:61717"
FT /ligand_part="Fe"
FT /ligand_part_id="ChEBI:CHEBI:18248"
FT /note="axial binding residue"
FT BINDING 81
FT /ligand="heme c"
FT /ligand_id="ChEBI:CHEBI:61717"
FT /ligand_part="Fe"
FT /ligand_part_id="ChEBI:CHEBI:18248"
FT /note="axial binding residue"
FT CONFLICT 11
FT /note="A -> G (in Ref. 1; AAB46987)"
FT /evidence="ECO:0000305"
FT HELIX 24..29
FT /evidence="ECO:0007829|PDB:4JCG"
FT TURN 33..35
FT /evidence="ECO:0007829|PDB:4JCG"
FT STRAND 38..40
FT /evidence="ECO:0007829|PDB:4JCG"
FT STRAND 42..44
FT /evidence="ECO:0007829|PDB:4JCG"
FT HELIX 47..53
FT /evidence="ECO:0007829|PDB:4JCG"
FT TURN 54..56
FT /evidence="ECO:0007829|PDB:4JCG"
FT STRAND 57..59
FT /evidence="ECO:0007829|PDB:1A56"
FT HELIX 60..70
FT /evidence="ECO:0007829|PDB:4JCG"
FT STRAND 74..79
FT /evidence="ECO:0007829|PDB:4JCG"
FT HELIX 89..101
FT /evidence="ECO:0007829|PDB:4JCG"
SQ SEQUENCE 103 AA; 10704 MW; 8100DEE593FBD7E5 CRC64;
MKTAWLGTFA ASALLVAGYA QADADLAKKN NCIACHQVET KVVGPALKDI AAKYADKDDA
ATYLAGKIKG GSSGVWGQIP MPPNVNVSDA DAKALADWIL TLK
