CY553_DESVM
ID CY553_DESVM Reviewed; 102 AA.
AC P00120; B8DKR6;
DT 21-JUL-1986, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-1996, sequence version 2.
DT 03-AUG-2022, entry version 131.
DE RecName: Full=Cytochrome c-553;
DE AltName: Full=Cytochrome c553;
DE Flags: Precursor;
GN OrderedLocusNames=DvMF_0538;
OS Desulfovibrio vulgaris (strain DSM 19637 / Miyazaki F).
OC Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales;
OC Desulfovibrionaceae; Desulfovibrio.
OX NCBI_TaxID=883;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RX PubMed=7783682; DOI=10.1111/j.1348-0421.1995.tb02172.x;
RA Kitamura M., Mizugai K., Taniguchi M., Akutsu H., Kumagai I., Nakaya T.;
RT "A gene encoding a cytochrome c oxidase-like protein is located closely to
RT the cytochrome c-553 gene in the anaerobic bacterium, Desulfovibrio
RT vulgaris (Miyazaki F).";
RL Microbiol. Immunol. 39:75-80(1995).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=DSM 19637 / Miyazaki F;
RA Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H.,
RA Bruce D., Goodwin L., Pitluck S., Sims D., Brettin T., Detter J.C., Han C.,
RA Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Hazen T.C.,
RA Richardson P.;
RT "Complete sequence of Desulfovibrio vulgaris str. 'Miyazaki F'.";
RL Submitted (OCT-2008) to the EMBL/GenBank/DDBJ databases.
RN [3]
RP PROTEIN SEQUENCE OF 24-102.
RX PubMed=6313657; DOI=10.1016/s0021-9258(17)44190-1;
RA Nakano K., Kikumoto Y., Yagi T.;
RT "Amino acid sequence of cytochrome c-553 from Desulfovibrio vulgaris
RT Miyazaki.";
RL J. Biol. Chem. 258:12409-12412(1983).
RN [4]
RP STRUCTURE BY MULTI-WAVELENGTH ANOMALOUS DISPERSION METHOD.
RX PubMed=1964450; DOI=10.1093/oxfordjournals.jbchem.a123267;
RA Nakagawa A., Higuchi Y., Yasuoka N., Katsube Y., Yagi T.;
RT "S-class cytochromes c have a variety of folding patterns: structure of
RT cytochrome c-553 from Desulfovibrio vulgaris determined by the multi-
RT wavelength anomalous dispersion method.";
RL J. Biochem. 108:701-703(1990).
CC -!- FUNCTION: Natural electron acceptor for a formate dehydrogenase.
CC -!- SUBCELLULAR LOCATION: Periplasm.
CC -!- PTM: Binds 1 heme c group covalently per subunit.
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DR EMBL; D32217; BAA06973.1; -; Genomic_DNA.
DR EMBL; CP001197; ACL07495.1; -; Genomic_DNA.
DR PIR; A00113; CCDV5M.
DR RefSeq; WP_012611687.1; NC_011769.1.
DR PDB; 1C53; X-ray; 1.80 A; A=24-102.
DR PDBsum; 1C53; -.
DR AlphaFoldDB; P00120; -.
DR SMR; P00120; -.
DR STRING; 883.DvMF_0538; -.
DR EnsemblBacteria; ACL07495; ACL07495; DvMF_0538.
DR KEGG; dvm:DvMF_0538; -.
DR eggNOG; COG2863; Bacteria.
DR HOGENOM; CLU_128253_3_1_7; -.
DR OMA; MSMAMKA; -.
DR OrthoDB; 1939800at2; -.
DR EvolutionaryTrace; P00120; -.
DR GO; GO:0042597; C:periplasmic space; IEA:UniProtKB-SubCell.
DR GO; GO:0009055; F:electron transfer activity; IEA:InterPro.
DR GO; GO:0020037; F:heme binding; IEA:InterPro.
DR GO; GO:0005506; F:iron ion binding; IEA:InterPro.
DR Gene3D; 1.10.760.10; -; 1.
DR InterPro; IPR009056; Cyt_c-like_dom.
DR InterPro; IPR036909; Cyt_c-like_dom_sf.
DR InterPro; IPR008168; Cyt_C_IC.
DR Pfam; PF13442; Cytochrome_CBB3; 1.
DR PRINTS; PR00605; CYTCHROMECIC.
DR SUPFAM; SSF46626; SSF46626; 1.
DR PROSITE; PS51007; CYTC; 1.
PE 1: Evidence at protein level;
KW 3D-structure; Direct protein sequencing; Electron transport; Heme; Iron;
KW Metal-binding; Periplasm; Signal; Transport.
FT SIGNAL 1..23
FT /evidence="ECO:0000269|PubMed:6313657"
FT CHAIN 24..102
FT /note="Cytochrome c-553"
FT /id="PRO_0000006536"
FT BINDING 33
FT /ligand="heme c"
FT /ligand_id="ChEBI:CHEBI:61717"
FT /note="covalent"
FT BINDING 36
FT /ligand="heme c"
FT /ligand_id="ChEBI:CHEBI:61717"
FT /note="covalent"
FT BINDING 37
FT /ligand="heme c"
FT /ligand_id="ChEBI:CHEBI:61717"
FT /ligand_part="Fe"
FT /ligand_part_id="ChEBI:CHEBI:18248"
FT /note="axial binding residue"
FT BINDING 80
FT /ligand="heme c"
FT /ligand_id="ChEBI:CHEBI:61717"
FT /ligand_part="Fe"
FT /ligand_part_id="ChEBI:CHEBI:18248"
FT /note="axial binding residue"
SQ SEQUENCE 102 AA; 10733 MW; 4C41D68934FB580C CRC64;
MKRILVVMSI CAALAFGVSA AMAADGAALY KSCVGCHGAD GSKQAMGVGH AVKGQKADEL
FKKLKGYADG SYGGEKKAVM TNLVKRYSDE EMKAMADYMS KL
