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CYB6_PHATC
ID   CYB6_PHATC              Reviewed;         215 AA.
AC   A0T0B8;
DT   06-FEB-2007, integrated into UniProtKB/Swiss-Prot.
DT   09-JAN-2007, sequence version 1.
DT   03-AUG-2022, entry version 67.
DE   RecName: Full=Cytochrome b6 {ECO:0000255|HAMAP-Rule:MF_00633};
GN   Name=petB {ECO:0000255|HAMAP-Rule:MF_00633};
OS   Phaeodactylum tricornutum (strain CCAP 1055/1).
OG   Plastid; Chloroplast.
OC   Eukaryota; Sar; Stramenopiles; Ochrophyta; Bacillariophyta;
OC   Bacillariophyceae; Bacillariophycidae; Naviculales; Phaeodactylaceae;
OC   Phaeodactylum.
OX   NCBI_TaxID=556484;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=CCAP 1055/1;
RX   PubMed=17252281; DOI=10.1007/s00438-006-0199-4;
RA   Oudot-Le Secq M.-P., Grimwood J., Shapiro H., Armbrust E.V., Bowler C.,
RA   Green B.R.;
RT   "Chloroplast genomes of the diatoms Phaeodactylum tricornutum and
RT   Thalassiosira pseudonana: comparison with other plastid genomes of the red
RT   lineage.";
RL   Mol. Genet. Genomics 277:427-439(2007).
CC   -!- FUNCTION: Component of the cytochrome b6-f complex, which mediates
CC       electron transfer between photosystem II (PSII) and photosystem I
CC       (PSI), cyclic electron flow around PSI, and state transitions.
CC       {ECO:0000255|HAMAP-Rule:MF_00633}.
CC   -!- COFACTOR:
CC       Name=heme; Xref=ChEBI:CHEBI:30413;
CC         Evidence={ECO:0000255|HAMAP-Rule:MF_00633};
CC       Note=Binds 2 heme groups. One heme group is bound covalently by a
CC       single cysteine link, the other one non-covalently. {ECO:0000255|HAMAP-
CC       Rule:MF_00633};
CC   -!- SUBUNIT: The 4 large subunits of the cytochrome b6-f complex are
CC       cytochrome b6, subunit IV (17 kDa polypeptide, PetD), cytochrome f and
CC       the Rieske protein, while the 4 small subunits are PetG, PetL, PetM and
CC       PetN. The complex functions as a dimer. {ECO:0000255|HAMAP-
CC       Rule:MF_00633}.
CC   -!- SUBCELLULAR LOCATION: Plastid, chloroplast thylakoid membrane
CC       {ECO:0000255|HAMAP-Rule:MF_00633}; Multi-pass membrane protein
CC       {ECO:0000255|HAMAP-Rule:MF_00633}.
CC   -!- MISCELLANEOUS: Heme 1 (or BH or b566) is high-potential and absorbs at
CC       about 566 nm, and heme 2 (or BL or b562) is low-potential and absorbs
CC       at about 562 nm. {ECO:0000255|HAMAP-Rule:MF_00633}.
CC   -!- SIMILARITY: Belongs to the cytochrome b family. PetB subfamily.
CC       {ECO:0000255|HAMAP-Rule:MF_00633}.
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DR   EMBL; EF067920; ABK20616.1; -; Genomic_DNA.
DR   RefSeq; YP_874393.1; NC_008588.1.
DR   AlphaFoldDB; A0T0B8; -.
DR   SMR; A0T0B8; -.
DR   STRING; 556484.A0T0B8; -.
DR   PRIDE; A0T0B8; -.
DR   GeneID; 4524678; -.
DR   InParanoid; A0T0B8; -.
DR   Proteomes; UP000000759; Chloroplast.
DR   GO; GO:0009535; C:chloroplast thylakoid membrane; IEA:UniProtKB-SubCell.
DR   GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR   GO; GO:0045158; F:electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity; IEA:UniProtKB-UniRule.
DR   GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR   GO; GO:0015979; P:photosynthesis; IEA:UniProtKB-UniRule.
DR   GO; GO:0022904; P:respiratory electron transport chain; IEA:InterPro.
DR   CDD; cd00284; Cytochrome_b_N; 1.
DR   Gene3D; 1.20.810.10; -; 1.
DR   HAMAP; MF_00633; Cytb6_f_cytb6; 1.
DR   InterPro; IPR005797; Cyt_b/b6_N.
DR   InterPro; IPR023530; Cyt_B6_PetB.
DR   InterPro; IPR027387; Cytb/b6-like_sf.
DR   InterPro; IPR016174; Di-haem_cyt_TM.
DR   PANTHER; PTHR19271:SF20; PTHR19271:SF20; 1.
DR   Pfam; PF00033; Cytochrome_B; 1.
DR   SUPFAM; SSF81342; SSF81342; 1.
DR   PROSITE; PS51002; CYTB_NTER; 1.
PE   3: Inferred from homology;
KW   Chloroplast; Electron transport; Heme; Iron; Membrane; Metal-binding;
KW   Photosynthesis; Plastid; Reference proteome; Thylakoid; Transmembrane;
KW   Transmembrane helix; Transport.
FT   CHAIN           1..215
FT                   /note="Cytochrome b6"
FT                   /id="PRO_0000275343"
FT   TRANSMEM        32..52
FT                   /note="Helical"
FT                   /evidence="ECO:0000255|HAMAP-Rule:MF_00633"
FT   TRANSMEM        90..110
FT                   /note="Helical"
FT                   /evidence="ECO:0000255|HAMAP-Rule:MF_00633"
FT   TRANSMEM        116..136
FT                   /note="Helical"
FT                   /evidence="ECO:0000255|HAMAP-Rule:MF_00633"
FT   TRANSMEM        186..206
FT                   /note="Helical"
FT                   /evidence="ECO:0000255|HAMAP-Rule:MF_00633"
FT   BINDING         35
FT                   /ligand="heme"
FT                   /ligand_id="ChEBI:CHEBI:30413"
FT                   /ligand_label="1"
FT                   /note="covalent"
FT                   /evidence="ECO:0000255|HAMAP-Rule:MF_00633"
FT   BINDING         86
FT                   /ligand="heme"
FT                   /ligand_id="ChEBI:CHEBI:30413"
FT                   /ligand_label="2"
FT                   /ligand_part="Fe"
FT                   /ligand_part_id="ChEBI:CHEBI:18248"
FT                   /note="axial binding residue"
FT                   /evidence="ECO:0000255|HAMAP-Rule:MF_00633"
FT   BINDING         100
FT                   /ligand="heme"
FT                   /ligand_id="ChEBI:CHEBI:30413"
FT                   /ligand_label="1"
FT                   /ligand_part="Fe"
FT                   /ligand_part_id="ChEBI:CHEBI:18248"
FT                   /note="axial binding residue"
FT                   /evidence="ECO:0000255|HAMAP-Rule:MF_00633"
FT   BINDING         187
FT                   /ligand="heme"
FT                   /ligand_id="ChEBI:CHEBI:30413"
FT                   /ligand_label="2"
FT                   /ligand_part="Fe"
FT                   /ligand_part_id="ChEBI:CHEBI:18248"
FT                   /note="axial binding residue"
FT                   /evidence="ECO:0000255|HAMAP-Rule:MF_00633"
FT   BINDING         202
FT                   /ligand="heme"
FT                   /ligand_id="ChEBI:CHEBI:30413"
FT                   /ligand_label="1"
FT                   /ligand_part="Fe"
FT                   /ligand_part_id="ChEBI:CHEBI:18248"
FT                   /note="axial binding residue"
FT                   /evidence="ECO:0000255|HAMAP-Rule:MF_00633"
SQ   SEQUENCE   215 AA;  23992 MW;  38FDA1211EE35FC1 CRC64;
     MNKVYDWFEE RLEVQAIADD ISSKYVPPHV NIFYCFGGLV LTCFLIQVAT GFAMTFYYRP
     SVVDAFASVE YIMTSVNFGW LIRSIHRWSA SMMVLMMVLH VFRVYLTGGF KKPRELTWVT
     GVTLSVVTVS FGVTGYSLPW DQVGFWACKI VTGVPAAVPI VGEPLVLILR GGESVGQSTL
     TRFYSAHTFV LPLAAAVLML THFLMIRKQG ISGPL
 
 
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