CYB_CORCX
ID CYB_CORCX Reviewed; 308 AA.
AC P92600; Q9B7H8; Q9B7H9; Q9B7I0; Q9B7I1; Q9B7I2; Q9B7I3; Q9G242; Q9G243;
AC Q9G245; Q9G3J1; Q9G3J2; Q9G3J3; Q9G3J5;
DT 16-JAN-2004, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-1997, sequence version 1.
DT 03-AUG-2022, entry version 98.
DE RecName: Full=Cytochrome b;
DE AltName: Full=Complex III subunit 3;
DE AltName: Full=Complex III subunit III;
DE AltName: Full=Cytochrome b-c1 complex subunit 3;
DE AltName: Full=Ubiquinol-cytochrome-c reductase complex cytochrome b subunit;
DE Flags: Fragment;
GN Name=MT-CYB; Synonyms=COB, CYTB, MTCYB;
OS Corvus corax (Common raven).
OG Mitochondrion.
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
OC Coelurosauria; Aves; Neognathae; Passeriformes; Corvoidea; Corvidae;
OC Corvus.
OX NCBI_TaxID=56781;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RA Cibois A., Pasquet E.;
RT "Molecular analysis of the phylogeny of 11 genera of the Corvidae.";
RL Ibis 141:297-306(1999).
RN [2]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1-102.
RC STRAIN=Isolate California-168, Isolate California-169,
RC Isolate California-170, Isolate California-171, Isolate California-175,
RC Isolate California-176, Isolate Idaho-1, Isolate Idaho-10,
RC Isolate Idaho-11, Isolate Idaho-12, Isolate Idaho-2, Isolate Idaho-7,
RC Isolate Idaho-8, Isolate Maine-1, Isolate Maine-2, Isolate Maine-3,
RC Isolate New Mexico-522, Isolate New Mexico-523, Isolate Siberia-566,
RC Isolate Washington-567, Isolate Washington-899, Isolate Washington-HAN, and
RC Isolate Washington-SOA;
RX PubMed=11197122; DOI=10.1098/rspb.2000.1308;
RA Omland K.E., Tarr C.L., Boarman W.I., Marzluff J.M., Fleischer R.C.;
RT "Cryptic genetic variation and paraphyly in ravens.";
RL Proc. R. Soc. B 267:2475-2482(2000).
CC -!- FUNCTION: Component of the ubiquinol-cytochrome c reductase complex
CC (complex III or cytochrome b-c1 complex) that is part of the
CC mitochondrial respiratory chain. The b-c1 complex mediates electron
CC transfer from ubiquinol to cytochrome c. Contributes to the generation
CC of a proton gradient across the mitochondrial membrane that is then
CC used for ATP synthesis. {ECO:0000250|UniProtKB:P00157}.
CC -!- COFACTOR:
CC Name=heme b; Xref=ChEBI:CHEBI:60344;
CC Evidence={ECO:0000250|UniProtKB:P00157};
CC Note=Binds 2 heme b groups non-covalently.
CC {ECO:0000250|UniProtKB:P00157};
CC -!- SUBUNIT: The cytochrome bc1 complex contains 11 subunits: 3 respiratory
CC subunits (MT-CYB, CYC1 and UQCRFS1), 2 core proteins (UQCRC1 and
CC UQCRC2) and 6 low-molecular weight proteins (UQCRH/QCR6, UQCRB/QCR7,
CC UQCRQ/QCR8, UQCR10/QCR9, UQCR11/QCR10 and a cleavage product of
CC UQCRFS1). This cytochrome bc1 complex then forms a dimer.
CC {ECO:0000250|UniProtKB:P00157}.
CC -!- SUBCELLULAR LOCATION: Mitochondrion inner membrane
CC {ECO:0000250|UniProtKB:P00157}; Multi-pass membrane protein
CC {ECO:0000250|UniProtKB:P00157}.
CC -!- MISCELLANEOUS: Heme 1 (or BL or b562) is low-potential and absorbs at
CC about 562 nm, and heme 2 (or BH or b566) is high-potential and absorbs
CC at about 566 nm. {ECO:0000250}.
CC -!- SIMILARITY: Belongs to the cytochrome b family. {ECO:0000255|PROSITE-
CC ProRule:PRU00967, ECO:0000255|PROSITE-ProRule:PRU00968}.
CC -!- CAUTION: The full-length protein contains only eight transmembrane
CC helices, not nine as predicted by bioinformatics tools.
CC {ECO:0000250|UniProtKB:P00157}.
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DR EMBL; U86031; AAB47508.1; -; Genomic_DNA.
DR EMBL; AY005933; AAF99344.1; -; Genomic_DNA.
DR EMBL; AY005934; AAF99345.1; -; Genomic_DNA.
DR EMBL; AY005935; AAF99346.1; -; Genomic_DNA.
DR EMBL; AY005936; AAF99347.1; -; Genomic_DNA.
DR EMBL; AY005937; AAF99348.1; -; Genomic_DNA.
DR EMBL; AY005938; AAF99349.2; -; Genomic_DNA.
DR EMBL; AY005939; AAF99350.1; -; Genomic_DNA.
DR EMBL; AY005940; AAF99351.1; -; Genomic_DNA.
DR EMBL; AY005945; AAF99356.1; -; Genomic_DNA.
DR EMBL; AY005946; AAF99357.1; -; Genomic_DNA.
DR EMBL; AY005948; AAF99359.1; -; Genomic_DNA.
DR EMBL; AY005949; AAF99360.1; -; Genomic_DNA.
DR EMBL; AY005950; AAF99361.1; -; Genomic_DNA.
DR EMBL; AY005951; AAF99362.1; -; Genomic_DNA.
DR EMBL; AY005952; AAF99363.2; -; Genomic_DNA.
DR EMBL; AY005953; AAF99364.2; -; Genomic_DNA.
DR EMBL; AY005961; AAF99372.1; -; Genomic_DNA.
DR EMBL; AY005962; AAF99373.1; -; Genomic_DNA.
DR EMBL; AY005965; AAF99376.2; -; Genomic_DNA.
DR EMBL; AY005967; AAF99378.1; -; Genomic_DNA.
DR EMBL; AY005969; AAF99380.2; -; Genomic_DNA.
DR EMBL; AY005972; AAF99383.1; -; Genomic_DNA.
DR EMBL; AY005973; AAF99384.2; -; Genomic_DNA.
DR AlphaFoldDB; P92600; -.
DR SMR; P92600; -.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0005743; C:mitochondrial inner membrane; IEA:UniProtKB-SubCell.
DR GO; GO:0070469; C:respirasome; IEA:UniProtKB-KW.
DR GO; GO:0009055; F:electron transfer activity; IEA:InterPro.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0022904; P:respiratory electron transport chain; IEA:InterPro.
DR CDD; cd00290; cytochrome_b_C; 1.
DR CDD; cd00284; Cytochrome_b_N; 1.
DR Gene3D; 1.20.810.10; -; 1.
DR InterPro; IPR005798; Cyt_b/b6_C.
DR InterPro; IPR036150; Cyt_b/b6_C_sf.
DR InterPro; IPR005797; Cyt_b/b6_N.
DR InterPro; IPR027387; Cytb/b6-like_sf.
DR InterPro; IPR016174; Di-haem_cyt_TM.
DR Pfam; PF00032; Cytochrom_B_C; 1.
DR Pfam; PF00033; Cytochrome_B; 1.
DR SUPFAM; SSF81342; SSF81342; 1.
DR SUPFAM; SSF81648; SSF81648; 1.
DR PROSITE; PS51003; CYTB_CTER; 1.
DR PROSITE; PS51002; CYTB_NTER; 1.
PE 3: Inferred from homology;
KW Electron transport; Heme; Iron; Membrane; Metal-binding; Mitochondrion;
KW Mitochondrion inner membrane; Respiratory chain; Transmembrane;
KW Transmembrane helix; Transport; Ubiquinone.
FT CHAIN <1..>308
FT /note="Cytochrome b"
FT /id="PRO_0000060810"
FT TRANSMEM 1..21
FT /note="Helical"
FT /evidence="ECO:0000250|UniProtKB:P00157"
FT TRANSMEM 45..66
FT /note="Helical"
FT /evidence="ECO:0000250|UniProtKB:P00157"
FT TRANSMEM 81..101
FT /note="Helical"
FT /evidence="ECO:0000250|UniProtKB:P00157"
FT TRANSMEM 146..166
FT /note="Helical"
FT /evidence="ECO:0000250|UniProtKB:P00157"
FT TRANSMEM 194..214
FT /note="Helical"
FT /evidence="ECO:0000250|UniProtKB:P00157"
FT TRANSMEM 256..276
FT /note="Helical"
FT /evidence="ECO:0000250|UniProtKB:P00157"
FT TRANSMEM 288..308
FT /note="Helical"
FT /evidence="ECO:0000250|UniProtKB:P00157"
FT BINDING 51
FT /ligand="heme b"
FT /ligand_id="ChEBI:CHEBI:60344"
FT /ligand_label="b562"
FT /ligand_part="Fe"
FT /ligand_part_id="ChEBI:CHEBI:18248"
FT /note="axial binding residue"
FT /evidence="ECO:0000250|UniProtKB:P00157"
FT BINDING 65
FT /ligand="heme b"
FT /ligand_id="ChEBI:CHEBI:60344"
FT /ligand_label="b566"
FT /ligand_part="Fe"
FT /ligand_part_id="ChEBI:CHEBI:18248"
FT /note="axial binding residue"
FT /evidence="ECO:0000250|UniProtKB:P00157"
FT BINDING 150
FT /ligand="heme b"
FT /ligand_id="ChEBI:CHEBI:60344"
FT /ligand_label="b562"
FT /ligand_part="Fe"
FT /ligand_part_id="ChEBI:CHEBI:18248"
FT /note="axial binding residue"
FT /evidence="ECO:0000250|UniProtKB:P00157"
FT BINDING 164
FT /ligand="heme b"
FT /ligand_id="ChEBI:CHEBI:60344"
FT /ligand_label="b566"
FT /ligand_part="Fe"
FT /ligand_part_id="ChEBI:CHEBI:18248"
FT /note="axial binding residue"
FT /evidence="ECO:0000250|UniProtKB:P00157"
FT BINDING 169
FT /ligand="a ubiquinone"
FT /ligand_id="ChEBI:CHEBI:16389"
FT /evidence="ECO:0000250|UniProtKB:P00157"
FT VARIANT 32
FT /note="T -> A (in strain: Isolate California-168, Isolate
FT California-169, Isolate California-170, Isolate California-
FT 171, Isolate California-175, Isolate California-176,
FT Isolate Idaho-1, Isolate Idaho-2, Isolate Idaho-7, Isolate
FT Idaho-8, Isolate Idaho-10, Isolate Idaho-11, Isolate Idaho-
FT 12, Isolate Washington-899 and Isolate Washington-SOA)"
FT VARIANT 40
FT /note="N -> D (in strain: Isolate California-168, Isolate
FT California-169, Isolate California-170, Isolate California-
FT 171, Isolate California-175, Isolate California-176,
FT Isolate Idaho-1, Isolate Idaho-2, Isolate Idaho-7, Isolate
FT Idaho-8, Isolate Idaho-10, Isolate Idaho-11, Isolate Idaho-
FT 12, Isolate Washington-899 and Isolate Washington-SOA)"
FT VARIANT 70
FT /note="I -> F (in strain: Isolate New Mexico-523)"
FT VARIANT 97
FT /note="V -> L (in strain: Isolate Washington-SOA)"
FT VARIANT 100
FT /note="V -> F (in strain: Isolate New Mexico-522)"
FT NON_TER 1
FT NON_TER 308
SQ SEQUENCE 308 AA; 34358 MW; 8ECED874C4D853A5 CRC64;
FGSLLGLCLI TQIITGLLLA MHYTADTSLA FTSVAHMCRN VQFGWLIRNL HANGASFFFI
CIYLHIGRGI YYGSYLNKET WNIGVILLLT LMATAFVGYV LPWGQMSFWG ATVITNLFSA
IPYIGQTLVE WLWGGFSVDN PTLTRFFAFH FLLPFVIAGL TLVHLTFLHE TGSNNPLGIP
SDCDKIPFHP YYSIKDLLGF ALMLIPLITL ALFSPNLLGD PENFTPANPL ATPPHIKPEW
YFLFAYAILR SIPNKLGGVL ALAASVLILF LIPLLHVSKQ RSMTFRPLSQ ILFWTLVADL
LILTWVGS
