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CYDA_ECOLI
ID   CYDA_ECOLI              Reviewed;         522 AA.
AC   P0ABJ9; P11026; P75754; P76823;
DT   25-OCT-2005, integrated into UniProtKB/Swiss-Prot.
DT   25-OCT-2005, sequence version 1.
DT   03-AUG-2022, entry version 136.
DE   RecName: Full=Cytochrome bd-I ubiquinol oxidase subunit 1;
DE            EC=7.1.1.7 {ECO:0000269|PubMed:1850294, ECO:0000269|PubMed:6307994};
DE   AltName: Full=Cytochrome bd-I oxidase subunit I;
DE   AltName: Full=Cytochrome d ubiquinol oxidase subunit I;
GN   Name=cydA; Synonyms=cyd-1; OrderedLocusNames=b0733, JW0722;
OS   Escherichia coli (strain K12).
OC   Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
OC   Enterobacteriaceae; Escherichia.
OX   NCBI_TaxID=83333;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC   STRAIN=K12;
RX   PubMed=2843510; DOI=10.1016/s0021-9258(18)37682-8;
RA   Green G.N., Fang H., Lin R.-J., Newton G., Mather M., Georgiou C.D.,
RA   Gennis R.B.;
RT   "The nucleotide sequence of the cyd locus encoding the two subunits of the
RT   cytochrome d terminal oxidase complex of Escherichia coli.";
RL   J. Biol. Chem. 263:13138-13143(1988).
RN   [2]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=K12 / W3110 / ATCC 27325 / DSM 5911;
RX   PubMed=8905232; DOI=10.1093/dnares/3.3.137;
RA   Oshima T., Aiba H., Baba T., Fujita K., Hayashi K., Honjo A., Ikemoto K.,
RA   Inada T., Itoh T., Kajihara M., Kanai K., Kashimoto K., Kimura S.,
RA   Kitagawa M., Makino K., Masuda S., Miki T., Mizobuchi K., Mori H.,
RA   Motomura K., Nakamura Y., Nashimoto H., Nishio Y., Saito N., Sampei G.,
RA   Seki Y., Tagami H., Takemoto K., Wada C., Yamamoto Y., Yano M.,
RA   Horiuchi T.;
RT   "A 718-kb DNA sequence of the Escherichia coli K-12 genome corresponding to
RT   the 12.7-28.0 min region on the linkage map.";
RL   DNA Res. 3:137-155(1996).
RN   [3]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=K12 / MG1655 / ATCC 47076;
RX   PubMed=9278503; DOI=10.1126/science.277.5331.1453;
RA   Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V.,
RA   Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F.,
RA   Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., Mau B.,
RA   Shao Y.;
RT   "The complete genome sequence of Escherichia coli K-12.";
RL   Science 277:1453-1462(1997).
RN   [4]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=K12 / W3110 / ATCC 27325 / DSM 5911;
RX   PubMed=16738553; DOI=10.1038/msb4100049;
RA   Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S.,
RA   Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.;
RT   "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655
RT   and W3110.";
RL   Mol. Syst. Biol. 2:E1-E5(2006).
RN   [5]
RP   PROTEIN SEQUENCE OF 1-6, FORMYLATION AT MET-1, AND SUBUNIT.
RC   STRAIN=MR43L/F152;
RX   PubMed=3281937; DOI=10.1016/s0021-9258(18)60705-7;
RA   Miller M.J., Hermodson M., Gennis R.B.;
RT   "The active form of the cytochrome d terminal oxidase complex of
RT   Escherichia coli is a heterodimer containing one copy of each of the two
RT   subunits.";
RL   J. Biol. Chem. 263:5235-5240(1988).
RN   [6]
RP   FUNCTION AS AN OXIDASE, BIOPHYSICOCHEMICAL PROPERTIES, ACTIVITY REGULATION,
RP   COFACTOR, SUBUNIT, AND INDUCTION.
RC   STRAIN=MR43L/F152;
RX   PubMed=6307994; DOI=10.1016/s0021-9258(17)44645-x;
RA   Miller M.J., Gennis R.B.;
RT   "The purification and characterization of the cytochrome d terminal oxidase
RT   complex of the Escherichia coli aerobic respiratory chain.";
RL   J. Biol. Chem. 258:9159-9165(1983).
RN   [7]
RP   COFACTOR.
RX   PubMed=3013298; DOI=10.1021/bi00357a002;
RA   Green G.N., Lorence R.M., Gennis R.B.;
RT   "Specific overproduction and purification of the cytochrome b558 component
RT   of the cytochrome d complex from Escherichia coli.";
RL   Biochemistry 25:2309-2314(1986).
RN   [8]
RP   COFACTOR.
RC   STRAIN=MR43L/F152;
RX   PubMed=3013299; DOI=10.1021/bi00357a003;
RA   Lorence R.M., Koland J.G., Gennis R.B.;
RT   "Coulometric and spectroscopic analysis of the purified cytochrome d
RT   complex of Escherichia coli: evidence for the identification of 'cytochrome
RT   a1' as cytochrome b595.";
RL   Biochemistry 25:2314-2321(1986).
RN   [9]
RP   TOPOLOGY.
RX   PubMed=3138232; DOI=10.1016/s0021-9258(18)37681-6;
RA   Georgiou C.D., Dueweke T.J., Gennis R.B.;
RT   "Beta-galactosidase gene fusions as probes for the cytoplasmic regions of
RT   subunits I and II of the membrane-bound cytochrome d terminal oxidase from
RT   Escherichia coli.";
RL   J. Biol. Chem. 263:13130-13137(1988).
RN   [10]
RP   FUNCTION, COFACTOR, AND MUTAGENESIS OF HIS-19; HIS-86; HIS-126; HIS-186;
RP   HIS-314 AND HIS-510.
RX   PubMed=2656671; DOI=10.1016/s0021-9258(18)83145-3;
RA   Fang H., Lin R.J., Gennis R.B.;
RT   "Location of heme axial ligands in the cytochrome d terminal oxidase
RT   complex of Escherichia coli determined by site-directed mutagenesis.";
RL   J. Biol. Chem. 264:8026-8032(1989).
RN   [11]
RP   DOMAINS.
RX   PubMed=1689724; DOI=10.1016/s0021-9258(19)39558-4;
RA   Dueweke T.J., Gennis R.B.;
RT   "Epitopes of monoclonal antibodies which inhibit ubiquinol oxidase activity
RT   of Escherichia coli cytochrome d complex localize functional domain.";
RL   J. Biol. Chem. 265:4273-4277(1990).
RN   [12]
RP   CATALYTIC ACTIVITY.
RX   PubMed=1850294; DOI=10.1021/bi00230a019;
RA   Puustinen A., Finel M., Haltia T., Gennis R.B., Wikstroem M.;
RT   "Properties of the two terminal oxidases of Escherichia coli.";
RL   Biochemistry 30:3936-3942(1991).
RN   [13]
RP   TOPOLOGY.
RX   PubMed=1724280; DOI=10.1111/j.1365-2958.1991.tb02097.x;
RA   Newton G., Yun C.H., Gennis R.B.;
RT   "Analysis of the topology of the cytochrome d terminal oxidase complex of
RT   Escherichia coli by alkaline phosphatase fusions.";
RL   Mol. Microbiol. 5:2511-2518(1991).
RN   [14]
RP   FUNCTION, COFACTOR, AND MUTAGENESIS OF MET-393.
RX   PubMed=7577938; DOI=10.1021/bi00041a029;
RA   Kaysser T.M., Ghaim J.B., Georgiou C., Gennis R.B.;
RT   "Methionine-393 is an axial ligand of the heme b558 component of the
RT   cytochrome bd ubiquinol oxidase from Escherichia coli.";
RL   Biochemistry 34:13491-13501(1995).
RN   [15]
RP   SUBCELLULAR LOCATION, AND TOPOLOGY.
RX   PubMed=15013751; DOI=10.1016/s0014-5793(04)00125-5;
RA   Zhang J., Barquera B., Gennis R.B.;
RT   "Gene fusions with beta-lactamase show that subunit I of the cytochrome bd
RT   quinol oxidase from E. coli has nine transmembrane helices with the O2
RT   reactive site near the periplasmic surface.";
RL   FEBS Lett. 561:58-62(2004).
RN   [16]
RP   SUBUNIT, AND SUBCELLULAR LOCATION.
RC   STRAIN=BL21-DE3;
RX   PubMed=16079137; DOI=10.1074/jbc.m506479200;
RA   Stenberg F., Chovanec P., Maslen S.L., Robinson C.V., Ilag L.,
RA   von Heijne G., Daley D.O.;
RT   "Protein complexes of the Escherichia coli cell envelope.";
RL   J. Biol. Chem. 280:34409-34419(2005).
RN   [17]
RP   TOPOLOGY [LARGE SCALE ANALYSIS].
RC   STRAIN=K12 / MG1655 / ATCC 47076;
RX   PubMed=15919996; DOI=10.1126/science.1109730;
RA   Daley D.O., Rapp M., Granseth E., Melen K., Drew D., von Heijne G.;
RT   "Global topology analysis of the Escherichia coli inner membrane
RT   proteome.";
RL   Science 308:1321-1323(2005).
RN   [18]
RP   FUNCTION IN PROTON TRANSLOCATION, AND DISRUPTION PHENOTYPE.
RC   STRAIN=K12;
RX   PubMed=19542282; DOI=10.1128/jb.00562-09;
RA   Bekker M., de Vries S., Ter Beek A., Hellingwerf K.J., de Mattos M.J.;
RT   "Respiration of Escherichia coli can be fully uncoupled via the
RT   nonelectrogenic terminal cytochrome bd-II oxidase.";
RL   J. Bacteriol. 191:5510-5517(2009).
RN   [19]
RP   FUNCTION IN PROTON TRANSLOCATION, AND DISRUPTION PHENOTYPE.
RC   STRAIN=K12;
RX   PubMed=21987791; DOI=10.1073/pnas.1108217108;
RA   Borisov V.B., Murali R., Verkhovskaya M.L., Bloch D.A., Han H.,
RA   Gennis R.B., Verkhovsky M.I.;
RT   "Aerobic respiratory chain of Escherichia coli is not allowed to work in
RT   fully uncoupled mode.";
RL   Proc. Natl. Acad. Sci. U.S.A. 108:17320-17324(2011).
RN   [20]
RP   PROBABLE INTERACTION WITH CYDX, POSSIBLE INTERACTION WITH APPX, SUBUNIT,
RP   AND DISRUPTION PHENOTYPE.
RC   STRAIN=K12 / MG1655 / ATCC 47076;
RX   PubMed=23749980; DOI=10.1128/jb.00324-13;
RA   Vanorsdel C.E., Bhatt S., Allen R.J., Brenner E.P., Hobson J.J., Jamil A.,
RA   Haynes B.M., Genson A.M., Hemm M.R.;
RT   "The Escherichia coli CydX protein is a member of the CydAB cytochrome bd
RT   oxidase complex and is required for cytochrome bd oxidase activity.";
RL   J. Bacteriol. 195:3640-3650(2013).
RN   [21]
RP   REVIEW.
RX   PubMed=21756872; DOI=10.1016/j.bbabio.2011.06.016;
RA   Borisov V.B., Gennis R.B., Hemp J., Verkhovsky M.I.;
RT   "The cytochrome bd respiratory oxygen reductases.";
RL   Biochim. Biophys. Acta 1807:1398-1413(2011).
CC   -!- FUNCTION: A terminal oxidase that produces a proton motive force by the
CC       vectorial transfer of protons across the inner membrane. It is the
CC       component of the aerobic respiratory chain of E.coli that predominates
CC       when cells are grown at low aeration. Generates a proton motive force
CC       using protons and electrons from opposite sides of the membrane to
CC       generate H(2)O, transferring 1 proton/electron.
CC       {ECO:0000269|PubMed:19542282, ECO:0000269|PubMed:21987791,
CC       ECO:0000269|PubMed:2656671, ECO:0000269|PubMed:6307994,
CC       ECO:0000269|PubMed:7577938}.
CC   -!- CATALYTIC ACTIVITY:
CC       Reaction=2 a ubiquinol + 4 H(+)(in) + O2(in) = 2 a ubiquinone + 4
CC         H(+)(out) + 2 H2O(in); Xref=Rhea:RHEA:40527, Rhea:RHEA-COMP:9565,
CC         Rhea:RHEA-COMP:9566, ChEBI:CHEBI:15377, ChEBI:CHEBI:15378,
CC         ChEBI:CHEBI:15379, ChEBI:CHEBI:16389, ChEBI:CHEBI:17976; EC=7.1.1.7;
CC         Evidence={ECO:0000269|PubMed:1850294, ECO:0000269|PubMed:6307994};
CC   -!- COFACTOR:
CC       Name=heme b; Xref=ChEBI:CHEBI:60344;
CC         Evidence={ECO:0000269|PubMed:2656671, ECO:0000269|PubMed:3013298,
CC         ECO:0000269|PubMed:3013299, ECO:0000269|PubMed:6307994,
CC         ECO:0000269|PubMed:7577938};
CC       Note=Binds 1 protoheme IX center (heme b558) per subunit.
CC       {ECO:0000269|PubMed:2656671, ECO:0000269|PubMed:3013298,
CC       ECO:0000269|PubMed:3013299, ECO:0000269|PubMed:6307994,
CC       ECO:0000269|PubMed:7577938};
CC   -!- COFACTOR:
CC       Name=heme b; Xref=ChEBI:CHEBI:60344;
CC         Evidence={ECO:0000269|PubMed:2656671, ECO:0000269|PubMed:3013298,
CC         ECO:0000269|PubMed:3013299, ECO:0000269|PubMed:6307994,
CC         ECO:0000269|PubMed:7577938};
CC       Note=Binds 1 protoheme IX center (heme b595, originally called
CC       cytochrome a1) per heterodimer, in conjunction with CydB.
CC       {ECO:0000269|PubMed:2656671, ECO:0000269|PubMed:3013298,
CC       ECO:0000269|PubMed:3013299, ECO:0000269|PubMed:6307994,
CC       ECO:0000269|PubMed:7577938};
CC   -!- COFACTOR:
CC       Name=heme d cis-diol; Xref=ChEBI:CHEBI:62814;
CC         Evidence={ECO:0000269|PubMed:2656671, ECO:0000269|PubMed:3013298,
CC         ECO:0000269|PubMed:3013299, ECO:0000269|PubMed:6307994,
CC         ECO:0000269|PubMed:7577938};
CC       Note=Binds 1 iron-chlorin (heme d or cytochrome d) per heterodimer, in
CC       conjunction with CydB. {ECO:0000269|PubMed:2656671,
CC       ECO:0000269|PubMed:3013298, ECO:0000269|PubMed:3013299,
CC       ECO:0000269|PubMed:6307994, ECO:0000269|PubMed:7577938};
CC   -!- ACTIVITY REGULATION: 90% inhibited by cyanide and 2-heptyl-4-
CC       hydroxyquinoline N-oxide, at 1 mM and 40 uM respectively.
CC       {ECO:0000269|PubMed:6307994}.
CC   -!- BIOPHYSICOCHEMICAL PROPERTIES:
CC       Kinetic parameters:
CC         KM=0.1 mM for ubiquinol-1 {ECO:0000269|PubMed:6307994};
CC         KM=0.28 mM for 2,3,5,6-tetramethyl-p-phenylenediamine
CC         {ECO:0000269|PubMed:6307994};
CC         KM=0.68 mM for N,N,N',N'-tetramethyl-p-phenylenediamine
CC         {ECO:0000269|PubMed:6307994};
CC         Vmax=383 umol/min/mg enzyme for ubiquinol-1
CC         {ECO:0000269|PubMed:6307994};
CC         Vmax=270 umol/min/mg enzyme for 2,3,5,6-tetramethyl-p-
CC         phenylenediamine {ECO:0000269|PubMed:6307994};
CC         Vmax=126 umol/min/mg enzyme for N,N,N',N'-tetramethyl-p-
CC         phenylenediamine {ECO:0000269|PubMed:6307994};
CC         Note=pH 7.0, 37 degrees Celsius.;
CC   -!- PATHWAY: Energy metabolism; oxidative phosphorylation.
CC   -!- SUBUNIT: Heterodimer of subunits I and II. Probably interacts with
CC       CydX, and overexpressed AppX. {ECO:0000269|PubMed:16079137,
CC       ECO:0000269|PubMed:23749980, ECO:0000269|PubMed:3281937,
CC       ECO:0000269|PubMed:6307994}.
CC   -!- INTERACTION:
CC       P0ABJ9; P0ABK2: cydB; NbExp=5; IntAct=EBI-906928, EBI-1213195;
CC   -!- SUBCELLULAR LOCATION: Cell inner membrane {ECO:0000269|PubMed:15013751,
CC       ECO:0000269|PubMed:16079137}; Multi-pass membrane protein
CC       {ECO:0000269|PubMed:15013751, ECO:0000269|PubMed:16079137}.
CC   -!- INDUCTION: Under conditions of low aeration, in stationary phase (at
CC       protein level). {ECO:0000269|PubMed:6307994}.
CC   -!- PTM: The N-terminus is blocked.
CC   -!- DISRUPTION PHENOTYPE: A double cydA/cydB deletion shows increased
CC       sensitivity to reductant (beta-mercapoethanol).
CC       {ECO:0000269|PubMed:19542282, ECO:0000269|PubMed:21987791,
CC       ECO:0000269|PubMed:23749980}.
CC   -!- SIMILARITY: Belongs to the cytochrome ubiquinol oxidase subunit 1
CC       family. {ECO:0000305}.
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DR   EMBL; J03939; AAA18804.1; -; Unassigned_DNA.
DR   EMBL; U00096; AAC73827.2; -; Genomic_DNA.
DR   EMBL; AP009048; BAA35399.1; -; Genomic_DNA.
DR   RefSeq; NP_415261.2; NC_000913.3.
DR   RefSeq; WP_000884361.1; NZ_SSZK01000033.1.
DR   PDB; 6RKO; EM; 2.68 A; A=1-522.
DR   PDB; 6RX4; EM; 3.30 A; A=1-522.
DR   PDBsum; 6RKO; -.
DR   PDBsum; 6RX4; -.
DR   AlphaFoldDB; P0ABJ9; -.
DR   SMR; P0ABJ9; -.
DR   BioGRID; 4263539; 372.
DR   ComplexPortal; CPX-268; Cytochrome bd-I ubiquinol oxidase complex.
DR   DIP; DIP-36181N; -.
DR   IntAct; P0ABJ9; 4.
DR   MINT; P0ABJ9; -.
DR   STRING; 511145.b0733; -.
DR   TCDB; 3.D.4.3.2; the proton-translocating cytochrome oxidase (cox) superfamily.
DR   jPOST; P0ABJ9; -.
DR   PaxDb; P0ABJ9; -.
DR   PRIDE; P0ABJ9; -.
DR   EnsemblBacteria; AAC73827; AAC73827; b0733.
DR   EnsemblBacteria; BAA35399; BAA35399; BAA35399.
DR   GeneID; 66670998; -.
DR   GeneID; 945341; -.
DR   KEGG; ecj:JW0722; -.
DR   KEGG; eco:b0733; -.
DR   PATRIC; fig|1411691.4.peg.1540; -.
DR   EchoBASE; EB0170; -.
DR   eggNOG; COG1271; Bacteria.
DR   HOGENOM; CLU_030555_3_3_6; -.
DR   InParanoid; P0ABJ9; -.
DR   OMA; FLINIAM; -.
DR   PhylomeDB; P0ABJ9; -.
DR   BioCyc; EcoCyc:CYDA-MON; -.
DR   BioCyc; MetaCyc:CYDA-MON; -.
DR   BRENDA; 7.1.1.7; 2026.
DR   UniPathway; UPA00705; -.
DR   PRO; PR:P0ABJ9; -.
DR   Proteomes; UP000000318; Chromosome.
DR   Proteomes; UP000000625; Chromosome.
DR   GO; GO:0070069; C:cytochrome complex; IDA:ComplexPortal.
DR   GO; GO:0005887; C:integral component of plasma membrane; IDA:EcoCyc.
DR   GO; GO:0016020; C:membrane; IDA:ComplexPortal.
DR   GO; GO:0005886; C:plasma membrane; IDA:EcoCyc.
DR   GO; GO:0009055; F:electron transfer activity; IDA:EcoCyc.
DR   GO; GO:0020037; F:heme binding; IDA:EcoCyc.
DR   GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR   GO; GO:0016679; F:oxidoreductase activity, acting on diphenols and related substances as donors; IDA:EcoCyc.
DR   GO; GO:0016682; F:oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor; IBA:GO_Central.
DR   GO; GO:0019646; P:aerobic electron transport chain; IDA:EcoCyc.
DR   GO; GO:0006119; P:oxidative phosphorylation; IC:ComplexPortal.
DR   InterPro; IPR002585; Cyt-d_ubiquinol_oxidase_su_1.
DR   PANTHER; PTHR30365; PTHR30365; 1.
DR   Pfam; PF01654; Cyt_bd_oxida_I; 1.
DR   PIRSF; PIRSF006446; Cyt_quinol_oxidase_1; 1.
PE   1: Evidence at protein level;
KW   3D-structure; Cell inner membrane; Cell membrane;
KW   Direct protein sequencing; Electron transport; Formylation; Heme; Iron;
KW   Membrane; Metal-binding; Reference proteome; Translocase; Transmembrane;
KW   Transmembrane helix; Transport.
FT   CHAIN           1..522
FT                   /note="Cytochrome bd-I ubiquinol oxidase subunit 1"
FT                   /id="PRO_0000183919"
FT   TOPO_DOM        1..15
FT                   /note="Periplasmic"
FT                   /evidence="ECO:0000305"
FT   TRANSMEM        16..35
FT                   /note="Helical"
FT                   /evidence="ECO:0000305"
FT   TOPO_DOM        36..54
FT                   /note="Cytoplasmic"
FT                   /evidence="ECO:0000305"
FT   TRANSMEM        55..69
FT                   /note="Helical"
FT                   /evidence="ECO:0000305"
FT   TOPO_DOM        70..96
FT                   /note="Periplasmic"
FT                   /evidence="ECO:0000305"
FT   TRANSMEM        97..114
FT                   /note="Helical"
FT                   /evidence="ECO:0000305"
FT   TOPO_DOM        115..128
FT                   /note="Cytoplasmic"
FT                   /evidence="ECO:0000305"
FT   TRANSMEM        129..146
FT                   /note="Helical"
FT                   /evidence="ECO:0000305"
FT   TOPO_DOM        147..186
FT                   /note="Periplasmic"
FT                   /evidence="ECO:0000305"
FT   TRANSMEM        187..203
FT                   /note="Helical"
FT                   /evidence="ECO:0000305"
FT   TOPO_DOM        204..219
FT                   /note="Cytoplasmic"
FT                   /evidence="ECO:0000305"
FT   TRANSMEM        220..235
FT                   /note="Helical"
FT                   /evidence="ECO:0000305"
FT   TOPO_DOM        236..390
FT                   /note="Periplasmic"
FT                   /evidence="ECO:0000305"
FT   TRANSMEM        391..407
FT                   /note="Helical"
FT                   /evidence="ECO:0000305"
FT   TOPO_DOM        408..423
FT                   /note="Cytoplasmic"
FT                   /evidence="ECO:0000305"
FT   TRANSMEM        424..441
FT                   /note="Helical"
FT                   /evidence="ECO:0000305"
FT   TOPO_DOM        442..472
FT                   /note="Periplasmic"
FT                   /evidence="ECO:0000305"
FT   TRANSMEM        473..487
FT                   /note="Helical"
FT                   /evidence="ECO:0000305"
FT   TOPO_DOM        488..522
FT                   /note="Cytoplasmic"
FT                   /evidence="ECO:0000305"
FT   BINDING         19
FT                   /ligand="heme b"
FT                   /ligand_id="ChEBI:CHEBI:60344"
FT                   /ligand_label="b595"
FT                   /ligand_part="Fe"
FT                   /ligand_part_id="ChEBI:CHEBI:18248"
FT                   /note="axial binding residue"
FT                   /evidence="ECO:0000255"
FT   BINDING         186
FT                   /ligand="heme b"
FT                   /ligand_id="ChEBI:CHEBI:60344"
FT                   /ligand_label="b558"
FT                   /ligand_part="Fe"
FT                   /ligand_part_id="ChEBI:CHEBI:18248"
FT                   /note="axial binding residue"
FT   BINDING         393
FT                   /ligand="heme b"
FT                   /ligand_id="ChEBI:CHEBI:60344"
FT                   /ligand_label="b558"
FT                   /ligand_part="Fe"
FT                   /ligand_part_id="ChEBI:CHEBI:18248"
FT                   /note="axial binding residue"
FT   MOD_RES         1
FT                   /note="N-formylmethionine"
FT                   /evidence="ECO:0000269|PubMed:3281937"
FT   MUTAGEN         19
FT                   /note="H->L,R: Loss of cytochrome b595 and heme d, no
FT                   aerobic growth, complex assembles."
FT                   /evidence="ECO:0000269|PubMed:2656671"
FT   MUTAGEN         86
FT                   /note="H->R: No effect."
FT                   /evidence="ECO:0000269|PubMed:2656671"
FT   MUTAGEN         126
FT                   /note="H->P: Loss of all cofactors, no aerobic growth,
FT                   complex assembles."
FT                   /evidence="ECO:0000269|PubMed:2656671"
FT   MUTAGEN         126
FT                   /note="H->R: No effect."
FT                   /evidence="ECO:0000269|PubMed:2656671"
FT   MUTAGEN         186
FT                   /note="H->L: Loss of cytochrome b558, no aerobic growth,
FT                   complex assembles, this subunit is more susceptible to
FT                   proteolysis."
FT                   /evidence="ECO:0000269|PubMed:2656671"
FT   MUTAGEN         314
FT                   /note="H->L: Grows aerobically, has altered cytochrome b/d
FT                   ratio, complex assembles."
FT                   /evidence="ECO:0000269|PubMed:2656671"
FT   MUTAGEN         314
FT                   /note="H->P: Loss of cytochrome b595 and heme d, no aerobic
FT                   growth, loss of complex."
FT                   /evidence="ECO:0000269|PubMed:2656671"
FT   MUTAGEN         393
FT                   /note="M->L: Cytochrome b558 shifts to a high spin
FT                   configuration, complex assembles. Retains about 1% quinol
FT                   oxidoreductase activity after purification."
FT   MUTAGEN         510
FT                   /note="H->L: No effect."
FT                   /evidence="ECO:0000269|PubMed:2656671"
FT   CONFLICT        213
FT                   /note="F -> L (in Ref. 1; AAA18804)"
FT                   /evidence="ECO:0000305"
FT   HELIX           4..19
FT                   /evidence="ECO:0007829|PDB:6RKO"
FT   TURN            20..22
FT                   /evidence="ECO:0007829|PDB:6RKO"
FT   HELIX           23..43
FT                   /evidence="ECO:0007829|PDB:6RKO"
FT   HELIX           47..79
FT                   /evidence="ECO:0007829|PDB:6RKO"
FT   HELIX           82..102
FT                   /evidence="ECO:0007829|PDB:6RKO"
FT   HELIX           104..116
FT                   /evidence="ECO:0007829|PDB:6RKO"
FT   TURN            118..120
FT                   /evidence="ECO:0007829|PDB:6RKO"
FT   HELIX           123..152
FT                   /evidence="ECO:0007829|PDB:6RKO"
FT   STRAND          156..160
FT                   /evidence="ECO:0007829|PDB:6RKO"
FT   TURN            161..164
FT                   /evidence="ECO:0007829|PDB:6RKO"
FT   STRAND          165..169
FT                   /evidence="ECO:0007829|PDB:6RKO"
FT   HELIX           171..175
FT                   /evidence="ECO:0007829|PDB:6RKO"
FT   HELIX           178..209
FT                   /evidence="ECO:0007829|PDB:6RKO"
FT   HELIX           213..236
FT                   /evidence="ECO:0007829|PDB:6RKO"
FT   HELIX           250..256
FT                   /evidence="ECO:0007829|PDB:6RKO"
FT   HELIX           312..332
FT                   /evidence="ECO:0007829|PDB:6RKO"
FT   HELIX           341..345
FT                   /evidence="ECO:0007829|PDB:6RKO"
FT   HELIX           348..350
FT                   /evidence="ECO:0007829|PDB:6RKO"
FT   HELIX           351..354
FT                   /evidence="ECO:0007829|PDB:6RKO"
FT   HELIX           355..357
FT                   /evidence="ECO:0007829|PDB:6RKO"
FT   TURN            358..360
FT                   /evidence="ECO:0007829|PDB:6RKO"
FT   STRAND          361..363
FT                   /evidence="ECO:0007829|PDB:6RX4"
FT   HELIX           364..366
FT                   /evidence="ECO:0007829|PDB:6RKO"
FT   HELIX           369..377
FT                   /evidence="ECO:0007829|PDB:6RKO"
FT   HELIX           383..412
FT                   /evidence="ECO:0007829|PDB:6RKO"
FT   STRAND          416..418
FT                   /evidence="ECO:0007829|PDB:6RX4"
FT   HELIX           420..428
FT                   /evidence="ECO:0007829|PDB:6RKO"
FT   HELIX           431..445
FT                   /evidence="ECO:0007829|PDB:6RKO"
FT   TURN            446..450
FT                   /evidence="ECO:0007829|PDB:6RKO"
FT   STRAND          451..453
FT                   /evidence="ECO:0007829|PDB:6RKO"
FT   TURN            454..456
FT                   /evidence="ECO:0007829|PDB:6RKO"
FT   HELIX           459..462
FT                   /evidence="ECO:0007829|PDB:6RKO"
FT   HELIX           468..499
FT                   /evidence="ECO:0007829|PDB:6RKO"
FT   HELIX           500..504
FT                   /evidence="ECO:0007829|PDB:6RKO"
FT   HELIX           510..512
FT                   /evidence="ECO:0007829|PDB:6RKO"
SQ   SEQUENCE   522 AA;  58205 MW;  E757442068BCFCFE CRC64;
     MLDIVELSRL QFALTAMYHF LFVPLTLGMA FLLAIMETVY VLSGKQIYKD MTKFWGKLFG
     INFALGVATG LTMEFQFGTN WSYYSHYVGD IFGAPLAIEG LMAFFLESTF VGLFFFGWDR
     LGKVQHMCVT WLVALGSNLS ALWILVANGW MQNPIASDFN FETMRMEMVS FSELVLNPVA
     QVKFVHTVAS GYVTGAMFIL GISAWYMLKG RDFAFAKRSF AIAASFGMAA VLSVIVLGDE
     SGYEMGDVQK TKLAAIEAEW ETQPAPAAFT LFGIPDQEEE TNKFAIQIPY ALGIIATRSV
     DTPVIGLKEL MVQHEERIRN GMKAYSLLEQ LRSGSTDQAV RDQFNSMKKD LGYGLLLKRY
     TPNVADATEA QIQQATKDSI PRVAPLYFAF RIMVACGFLL LAIIALSFWS VIRNRIGEKK
     WLLRAALYGI PLPWIAVEAG WFVAEYGRQP WAIGEVLPTA VANSSLTAGD LIFSMVLICG
     LYTLFLVAEL FLMFKFARLG PSSLKTGRYH FEQSSTTTQP AR
 
 
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