CYL4_ORYSJ
ID CYL4_ORYSJ Reviewed; 267 AA.
AC Q6YX89;
DT 25-APR-2018, integrated into UniProtKB/Swiss-Prot.
DT 05-JUL-2004, sequence version 1.
DT 03-AUG-2022, entry version 119.
DE RecName: Full=Cyclase-like protein 4 {ECO:0000303|PubMed:25974367};
DE Short=OsCYL4 {ECO:0000303|PubMed:25974367};
DE Flags: Precursor;
GN Name=CYL4 {ECO:0000303|PubMed:25974367};
GN OrderedLocusNames=Os09g0110300 {ECO:0000312|EMBL:BAT06823.1},
GN LOC_Os09g02270 {ECO:0000305};
GN ORFNames=OsJ_28368 {ECO:0000312|EMBL:EEE69187.1},
GN P0646B04.11 {ECO:0000312|EMBL:BAD17540.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [6]
RP FUNCTION, SUBCELLULAR LOCATION, TISSUE SPECIFICITY, INDUCTION, GENE FAMILY,
RP AND NOMENCLATURE.
RX PubMed=25974367; DOI=10.1016/j.jplph.2015.03.018;
RA Qin Y., Shen X., Wang N., Ding X.;
RT "Characterization of a novel cyclase-like gene family involved in
RT controlling stress tolerance in rice.";
RL J. Plant Physiol. 181:30-41(2015).
CC -!- FUNCTION: May be involved in the control of plant responses to
CC environmental stresses. {ECO:0000305|PubMed:25974367}.
CC -!- SUBCELLULAR LOCATION: Secreted, extracellular space, extracellular
CC matrix {ECO:0000305|PubMed:25974367}.
CC -!- TISSUE SPECIFICITY: Highly expressed in leaf sheaths and leaf collars.
CC {ECO:0000269|PubMed:25974367}.
CC -!- INDUCTION: Induced by cold, salt and drought stresses. Induced by
CC abscisic acid, auxine, brassinosteroid, ethylene, gibberellin,
CC jasmonate, kinetin, reactive oxygen species and salicylate.
CC -!- MISCELLANEOUS: Plants over-expressing CYL4 exhibit reduced tolerance to
CC cold, salt and drought stresses. {ECO:0000269|PubMed:25974367}.
CC -!- SIMILARITY: Belongs to the Cyclase 1 superfamily. {ECO:0000305}.
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DR EMBL; AP005709; BAD17540.1; -; Genomic_DNA.
DR EMBL; AP008215; BAF24485.1; -; Genomic_DNA.
DR EMBL; AP014965; BAT06823.1; -; Genomic_DNA.
DR EMBL; CM000146; EEE69187.1; -; Genomic_DNA.
DR EMBL; AK061798; -; NOT_ANNOTATED_CDS; mRNA.
DR RefSeq; XP_015612108.1; XM_015756622.1.
DR AlphaFoldDB; Q6YX89; -.
DR SMR; Q6YX89; -.
DR STRING; 4530.OS09T0110300-01; -.
DR PaxDb; Q6YX89; -.
DR PRIDE; Q6YX89; -.
DR EnsemblPlants; Os09t0110300-01; Os09t0110300-01; Os09g0110300.
DR EnsemblPlants; Os09t0110300-02; Os09t0110300-02; Os09g0110300.
DR GeneID; 4346391; -.
DR Gramene; Os09t0110300-01; Os09t0110300-01; Os09g0110300.
DR Gramene; Os09t0110300-02; Os09t0110300-02; Os09g0110300.
DR KEGG; osa:4346391; -.
DR eggNOG; ENOG502QRBQ; Eukaryota.
DR HOGENOM; CLU_030671_4_1_1; -.
DR InParanoid; Q6YX89; -.
DR OMA; IFDITHE; -.
DR OrthoDB; 1264549at2759; -.
DR Proteomes; UP000000763; Chromosome 9.
DR Proteomes; UP000007752; Chromosome 9.
DR Proteomes; UP000059680; Chromosome 9.
DR GO; GO:0071944; C:cell periphery; IDA:UniProtKB.
DR GO; GO:0005576; C:extracellular region; IEA:UniProtKB-KW.
DR GO; GO:0004061; F:arylformamidase activity; IBA:GO_Central.
DR GO; GO:0009409; P:response to cold; IMP:UniProtKB.
DR GO; GO:0009651; P:response to salt stress; IMP:UniProtKB.
DR GO; GO:0009414; P:response to water deprivation; IMP:UniProtKB.
DR GO; GO:0019441; P:tryptophan catabolic process to kynurenine; IBA:GO_Central.
DR Gene3D; 3.50.30.50; -; 1.
DR InterPro; IPR007325; KFase/CYL.
DR InterPro; IPR037175; KFase_sf.
DR PANTHER; PTHR31118; PTHR31118; 1.
DR Pfam; PF04199; Cyclase; 1.
DR SUPFAM; SSF102198; SSF102198; 1.
PE 2: Evidence at transcript level;
KW Extracellular matrix; Reference proteome; Secreted; Signal;
KW Stress response.
FT SIGNAL 1..17
FT /evidence="ECO:0000255"
FT CHAIN 18..267
FT /note="Cyclase-like protein 4"
FT /id="PRO_5011948282"
SQ SEQUENCE 267 AA; 29583 MW; CC521262572DB1EB CRC64;
MAPTPLFLLL LLTGVTAEPA HPGYAEGDGS SCDVAAVAVA ERREEFDGGR IVDISHYYRE
EMPEWESADG TGGGFLRLVR SMRNGSDIAN FSELRLTAHS GTHVDAPGHV FDHYYHAGFD
VDTLDLAILN GPALLVDVPR DSNITANVME SLHIPKGVRR VLFRTLNTDR KLMWKKEFDT
SYVGFMKDGA QWLIDNTDIR LVGVDYLSVG AFDECIPAHL VFLEKREVIL VEALHLEHVT
PGIYTLHCLP LRLRGSEGSP ARCILIK
