D1861_ARATH
ID D1861_ARATH Reviewed; 212 AA.
AC Q94AD1;
DT 09-JUL-2014, integrated into UniProtKB/Swiss-Prot.
DT 01-DEC-2001, sequence version 1.
DT 25-MAY-2022, entry version 106.
DE RecName: Full=Putative DNA-binding protein At1g48610;
DE AltName: Full=AT-hook DNA-binding motif-containing protein At1g48610;
GN OrderedLocusNames=At1g48610; ORFNames=T1N15.24;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
RX PubMed=19376835; DOI=10.1104/pp.109.138677;
RA Reiland S., Messerli G., Baerenfaller K., Gerrits B., Endler A.,
RA Grossmann J., Gruissem W., Baginsky S.;
RT "Large-scale Arabidopsis phosphoproteome profiling reveals novel
RT chloroplast kinase substrates and phosphorylation networks.";
RL Plant Physiol. 150:889-903(2009).
CC -!- FUNCTION: May bind DNA. {ECO:0000305}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=1;
CC Comment=A number of isoforms are produced. According to EST
CC sequences.;
CC Name=1;
CC IsoId=Q94AD1-1; Sequence=Displayed;
CC -!- SEQUENCE CAUTION:
CC Sequence=AAF79709.1; Type=Erroneous gene model prediction; Note=The predicted gene At1g48610 has been split into 2 genes: At1g48605 and At1g48610.; Evidence={ECO:0000305};
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DR EMBL; AC020889; AAF79709.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002684; AEE32326.1; -; Genomic_DNA.
DR EMBL; AY133568; AAM91398.1; -; mRNA.
DR EMBL; AY048274; AAK82536.1; -; mRNA.
DR EMBL; AY088093; AAM65639.1; -; mRNA.
DR RefSeq; NP_564531.1; NM_103757.3. [Q94AD1-1]
DR AlphaFoldDB; Q94AD1; -.
DR SMR; Q94AD1; -.
DR BioGRID; 26507; 3.
DR STRING; 3702.AT1G48610.1; -.
DR iPTMnet; Q94AD1; -.
DR PaxDb; Q94AD1; -.
DR PRIDE; Q94AD1; -.
DR ProteomicsDB; 222671; -. [Q94AD1-1]
DR EnsemblPlants; AT1G48610.1; AT1G48610.1; AT1G48610. [Q94AD1-1]
DR GeneID; 841282; -.
DR Gramene; AT1G48610.1; AT1G48610.1; AT1G48610. [Q94AD1-1]
DR KEGG; ath:AT1G48610; -.
DR Araport; AT1G48610; -.
DR TAIR; locus:2198050; AT1G48610.
DR eggNOG; KOG0672; Eukaryota.
DR HOGENOM; CLU_1301205_0_0_1; -.
DR InParanoid; Q94AD1; -.
DR PRO; PR:Q94AD1; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q94AD1; baseline and differential.
DR Genevisible; Q94AD1; AT.
DR GO; GO:0005634; C:nucleus; HDA:TAIR.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR InterPro; IPR017956; AT_hook_DNA-bd_motif.
DR PRINTS; PR00929; ATHOOK.
DR SMART; SM00384; AT_hook; 4.
PE 1: Evidence at protein level;
KW Alternative splicing; Coiled coil; DNA-binding; Nucleus;
KW Reference proteome; Repeat.
FT CHAIN 1..212
FT /note="Putative DNA-binding protein At1g48610"
FT /id="PRO_0000429571"
FT DNA_BIND 45..56
FT /note="A.T hook 1"
FT DNA_BIND 70..79
FT /note="A.T hook 2"
FT DNA_BIND 94..98
FT /note="A.T hook 3"
FT DNA_BIND 118..127
FT /note="A.T hook 4"
FT REGION 1..130
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 176..210
FT /evidence="ECO:0000255"
FT COMPBIAS 11..44
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 212 AA; 21674 MW; A23CEF4033BDA685 CRC64;
MAKTALTPPA SGSEVPRSGT PGDASGNKPQ TDATGVSATD TASQKRGRGR PPKAKSDSSQ
IGAVSAKAST KPSGRPKRNV AQAVPSTSVA AAVKKRGRAK RSTVTAAVVT TATGEGSRKR
GRPKKDDVAA ATVPAETVVA PAKRRGRKPT VEVAAQPVRR TRKSTSVAPV AANVGDLKKR
TALLQKKVKE AAAKLKQAVT AIDEVQKLAD GM
