ID   D53L_ORYSJ              Reviewed;        1129 AA.
AC   Q2QYW5; A3CE41;
DT   16-MAR-2016, integrated into UniProtKB/Swiss-Prot.
DT   11-JUL-2006, sequence version 2.
DT   03-AUG-2022, entry version 110.
DE   RecName: Full=Protein DWARF 53-LIKE {ECO:0000303|PubMed:24336200};
GN   Name=D53-L {ECO:0000305};
GN   OrderedLocusNames=LOC_Os12g01360 {ECO:0000312|EMBL:ABA95594.2},
GN   Os12g0104300 {ECO:0000312|EMBL:BAF28944.1};
GN   ORFNames=OsJ_34905 {ECO:0000312|EMBL:EAZ19354.1};
OS   Oryza sativa subsp. japonica (Rice).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC   Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX   NCBI_TaxID=39947 {ECO:0000312|EMBL:ABA95594.2};
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=16188032; DOI=10.1186/1741-7007-3-20;
RG   The rice chromosomes 11 and 12 sequencing consortia;
RT   "The sequence of rice chromosomes 11 and 12, rich in disease resistance
RT   genes and recent gene duplications.";
RL   BMC Biol. 3:20-20(2005).
RN   [2]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=16100779; DOI=10.1038/nature03895;
RG   International rice genome sequencing project (IRGSP);
RT   "The map-based sequence of the rice genome.";
RL   Nature 436:793-800(2005).
RN   [3]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=18089549; DOI=10.1093/nar/gkm978;
RG   The rice annotation project (RAP);
RT   "The rice annotation project database (RAP-DB): 2008 update.";
RL   Nucleic Acids Res. 36:D1028-D1033(2008).
RN   [4]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA   Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA   Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA   Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA   Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT   "Improvement of the Oryza sativa Nipponbare reference genome using next
RT   generation sequence and optical map data.";
RL   Rice 6:4-4(2013).
RN   [5]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA   Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA   Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA   Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA   Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA   Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA   Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA   Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA   Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA   Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA   Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA   Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA   Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA   Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA   McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT   "The genomes of Oryza sativa: a history of duplications.";
RL   PLoS Biol. 3:266-281(2005).
RN   [6]
RP   GENE FAMILY.
RX   PubMed=24336200; DOI=10.1038/nature12870;
RA   Jiang L., Liu X., Xiong G., Liu H., Chen F., Wang L., Meng X., Liu G.,
RA   Yu H., Yuan Y., Yi W., Zhao L., Ma H., He Y., Wu Z., Melcher K., Qian Q.,
RA   Xu H.E., Wang Y., Li J.;
RT   "DWARF 53 acts as a repressor of strigolactone signalling in rice.";
RL   Nature 504:401-405(2013).
CC   -!- FUNCTION: Repressor of strigolactones (SL) signaling. Subjected to a
CC       negative feedback control of SL signaling.
CC       {ECO:0000250|UniProtKB:Q2RBP2}.
CC   -!- DOMAIN: Contains 3 EAR motifs associated with active repression of
CC       several target genes. {ECO:0000305}.
CC   -!- PTM: Polyubiquitinated. Strigolactone, but not karrikin, triggers rapid
CC       SCF(D3)-dependent degradation via the proteasome.
CC       {ECO:0000250|UniProtKB:Q2RBP2}.
CC   -!- SIMILARITY: Belongs to the ClpA/ClpB family. {ECO:0000305}.
CC   -!- SEQUENCE CAUTION:
CC       Sequence=EAZ19354.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR   EMBL; DP000011; ABA95594.2; -; Genomic_DNA.
DR   EMBL; AP008218; BAF28944.1; -; Genomic_DNA.
DR   EMBL; AP014968; BAT15475.1; -; Genomic_DNA.
DR   EMBL; CM000149; EAZ19354.1; ALT_SEQ; Genomic_DNA.
DR   RefSeq; XP_015620371.1; XM_015764885.1.
DR   AlphaFoldDB; Q2QYW5; -.
DR   STRING; 4530.OS12T0104300-01; -.
DR   PaxDb; Q2QYW5; -.
DR   PRIDE; Q2QYW5; -.
DR   EnsemblPlants; Os12t0104300-01; Os12t0104300-01; Os12g0104300.
DR   GeneID; 4351252; -.
DR   Gramene; Os12t0104300-01; Os12t0104300-01; Os12g0104300.
DR   KEGG; osa:4351252; -.
DR   eggNOG; KOG1051; Eukaryota.
DR   HOGENOM; CLU_006575_0_1_1; -.
DR   InParanoid; Q2QYW5; -.
DR   OMA; RRDIWFN; -.
DR   OrthoDB; 182446at2759; -.
DR   Proteomes; UP000000763; Chromosome 12.
DR   Proteomes; UP000007752; Chromosome 12.
DR   Proteomes; UP000059680; Chromosome 12.
DR   ExpressionAtlas; Q2QYW5; baseline and differential.
DR   Gene3D; 1.10.1780.10; -; 1.
DR   Gene3D; 3.40.50.300; -; 1.
DR   InterPro; IPR036628; Clp_N_dom_sf.
DR   InterPro; IPR004176; Clp_R_dom.
DR   InterPro; IPR027417; P-loop_NTPase.
DR   Pfam; PF02861; Clp_N; 2.
DR   SUPFAM; SSF52540; SSF52540; 1.
DR   PROSITE; PS51903; CLP_R; 1.
PE   3: Inferred from homology;
KW   Reference proteome; Repeat; Ubl conjugation.
FT   CHAIN           1..1129
FT                   /note="Protein DWARF 53-LIKE"
FT                   /id="PRO_0000435719"
FT   DOMAIN          8..180
FT                   /note="Clp R"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU01251"
FT   REGION          12..85
FT                   /note="Repeat 1"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU01251"
FT   REGION          102..180
FT                   /note="Repeat 2"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU01251"
FT   REGION          519..573
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          587..654
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          975..1001
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   MOTIF           577..581
FT                   /note="EAR 1"
FT                   /evidence="ECO:0000305"
FT   MOTIF           798..802
FT                   /note="EAR 2"
FT                   /evidence="ECO:0000305"
FT   MOTIF           975..980
FT                   /note="EAR 3"
FT                   /evidence="ECO:0000305"
FT   COMPBIAS        553..573
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        595..613
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   1129 AA;  122269 MW;  859961EE8488A0E2 CRC64;
     MPTPVAAARQ CLSPAAVPAL DAAVASARRR AHAQTTSLHL ISSLLAPPAP PLLRDALARA
     RSAAYSPRVQ LKALDLCFAV SLDRLPSVSA SSSSGAADEP PVSNSLMAAI KRSQANQRRN
     PDTFHFYHQA ATAQTPAAVK VELSHLVLAI LDDPVVSRVF AEAGFRSGDI KLAILRPAPP
     MPLLGRLPTR TRPPPLFLCS FAAADDADVP SPAGNLAGAG EENCRRIAEI LSRGRNPMLV
     GVGAASAADD FAAASPYRII HVDPNTIDRS DLGVAAAMAS ATSGLIISIG DLKQLVPDED
     AEAQENGRRV VAEVTRVLEA HSKVGRVWVM GWSATYETYL AFLSKFPLVD KDWDLQLLPI
     TAVHAAPAAA GPAAAGGLMP PATTVAAFSK PAASLMDSFV PFGGFLCDNY EENSLTANSC
     PQALRCQQCN DKYEQEVATI ISASGITAED HHQGGLPSLL QNGSMMGPNN GFDPVKVRDD
     RMVLNSKILN LQKKWNEYCL RLHQDCQRIN RDPYKPFPRY IGVPADKERS ANPSKGSESI
     GVQKDVIKPC AVSAVHSSST ARPISSPSVT NKRNEDLVLN LQARHSKSDE NLQERGMQSQ
     HGTLSNADNP DDHASPSSAA PVETDLVLCT PRDCSSKGSS STCSKRVEDS ERSVHLVPKK
     VDDLNLKHPQ LSVQPNSCSW SSINVGKTSH STLHSVASGG FSAFGQWQKR SPLAAQNSDL
     SNYKLLVERL FKVVGRQEEA VSAICESIVR CRSTESRRGP SRNDIWLCFH GSDSMAKKRI
     AVALAELMHG SKENLIYLDL NLQDWDDSSF RGKTGIDCIV EQLSKKRRSV LFLDNIDRAD
     CLVQDSLSDA IKSGRFQDMR GKVVDINDSI VVLSRSMIHG SKNGLEEGLS FSEEKILATR
     GHRLKILVEP GRAITSGCPS GKVVVSPRHF LTKIQASLCS GSISKRKLSM SDDQEKLQES
     PSSLKRLHRT SSIPFDLNLP VDEDEPFDAD DDSSSHENSY GNTEKSIDAL LHSVDGSINF
     KPFDFDKLAD DMLQEFSNIL RKNLGAECML EIDVGAMEQI LAAAWKSEDK GPVQTWLEQV
     FARSLDELKL KYKHVSSSTL RLVPCEDTLP TVKGDGLGVL LPPRIILDC