D8FAD_REBSA
ID D8FAD_REBSA Reviewed; 427 AA.
AC A4KDP1;
DT 11-NOV-2015, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-2007, sequence version 1.
DT 03-AUG-2022, entry version 58.
DE RecName: Full=Acyl-lipid 8-desaturase {ECO:0000305};
DE EC=1.14.19.- {ECO:0000305|PubMed:17291553};
DE AltName: Full=Delta-8 desaturase {ECO:0000303|PubMed:17291553};
GN Name=D8Des {ECO:0000312|EMBL:ABL96296.1};
OS Rebecca salina (Marine microalga) (Pavlova salina).
OC Eukaryota; Haptista; Haptophyta; Pavlovales; Pavlovaceae; Rebecca.
OX NCBI_TaxID=561169;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA].
RC STRAIN=CS-49 {ECO:0000312|EMBL:ABL96296.1};
RX PubMed=17291553; DOI=10.1016/j.phytochem.2006.12.016;
RA Zhou X.R., Robert S.S., Petrie J.R., Frampton D.M., Mansour M.P.,
RA Blackburn S.I., Nichols P.D., Green A.G., Singh S.P.;
RT "Isolation and characterization of genes from the marine microalga Pavlova
RT salina encoding three front-end desaturases involved in docosahexaenoic
RT acid biosynthesis.";
RL Phytochemistry 68:785-796(2007).
CC -!- FUNCTION: Fatty acid desaturase that introduces a cis double bond at
CC the 8-position in 20-carbon polyunsaturated fatty acids incorporated in
CC a glycerolipid that contain a Delta(8) double bond to yield
CC (20:4(8,11,14,17)). {ECO:0000269|PubMed:17291553}.
CC -!- COFACTOR:
CC Name=Fe(2+); Xref=ChEBI:CHEBI:29033;
CC Evidence={ECO:0000250|UniProtKB:O00767};
CC -!- SUBCELLULAR LOCATION: Membrane {ECO:0000255}; Multi-pass membrane
CC protein {ECO:0000255}.
CC -!- DOMAIN: The cytochrome b5 heme-binding domain acts as the direct
CC electron donor to the active site of the desaturase, and does not
CC require an external cytochrome. {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the fatty acid desaturase type 1 family.
CC {ECO:0000305}.
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DR EMBL; DQ995518; ABL96296.1; -; mRNA.
DR AlphaFoldDB; A4KDP1; -.
DR SMR; A4KDP1; -.
DR PRIDE; A4KDP1; -.
DR KEGG; ag:ABL96296; -.
DR BioCyc; MetaCyc:MON-19040; -.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0016717; F:oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water; IDA:UniProtKB.
DR GO; GO:0042759; P:long-chain fatty acid biosynthetic process; IDA:UniProtKB.
DR GO; GO:0006636; P:unsaturated fatty acid biosynthetic process; IDA:UniProtKB.
DR Gene3D; 3.10.120.10; -; 1.
DR InterPro; IPR001199; Cyt_B5-like_heme/steroid-bd.
DR InterPro; IPR036400; Cyt_B5-like_heme/steroid_sf.
DR InterPro; IPR005804; FA_desaturase_dom.
DR InterPro; IPR012171; Fatty_acid_desaturase.
DR PANTHER; PTHR19353; PTHR19353; 1.
DR Pfam; PF00173; Cyt-b5; 1.
DR Pfam; PF00487; FA_desaturase; 1.
DR PIRSF; PIRSF015921; FA_sphinglp_des; 1.
DR SUPFAM; SSF55856; SSF55856; 1.
DR PROSITE; PS50255; CYTOCHROME_B5_2; 1.
PE 2: Evidence at transcript level;
KW Electron transport; Fatty acid biosynthesis; Fatty acid metabolism; Heme;
KW Iron; Lipid biosynthesis; Lipid metabolism; Membrane; Metal-binding;
KW Oxidoreductase; Transmembrane; Transmembrane helix; Transport.
FT CHAIN 1..427
FT /note="Acyl-lipid 8-desaturase"
FT /id="PRO_0000434762"
FT TRANSMEM 189..209
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 261..281
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 286..306
FT /note="Helical"
FT /evidence="ECO:0000255"
FT DOMAIN 36..84
FT /note="Cytochrome b5 heme-binding"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00279"
FT REGION 1..24
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT MOTIF 178..182
FT /note="Histidine box-1"
FT /evidence="ECO:0000250|UniProtKB:A0PJ29"
FT MOTIF 213..218
FT /note="Histidine box-2"
FT /evidence="ECO:0000250|UniProtKB:A0PJ29"
FT MOTIF 373..377
FT /note="Histidine box-3"
FT /evidence="ECO:0000250|UniProtKB:A0PJ29"
FT BINDING 52
FT /ligand="heme"
FT /ligand_id="ChEBI:CHEBI:30413"
FT /ligand_part="Fe"
FT /ligand_part_id="ChEBI:CHEBI:18248"
FT /note="axial binding residue"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00279"
FT BINDING 75
FT /ligand="heme"
FT /ligand_id="ChEBI:CHEBI:30413"
FT /ligand_part="Fe"
FT /ligand_part_id="ChEBI:CHEBI:18248"
FT /note="axial binding residue"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00279"
SQ SEQUENCE 427 AA; 47982 MW; 3306022F8530C300 CRC64;
MGRGGDSSGQ AHPAAELAVP SDRAEVSNAD SKALHIVLYG KRVDVTKFQR THPGGSKVFR
IFQDRDATEQ FESYHSKRAI KMMEGMLKKS EDAPADTPLP SQSPMGKDFK AMIERHVAAG
YYDPCPLDEL FKLSLVLLPT FAGMYMLKAG VGSPLCGALM VSFGWYLDGW LAHDYLHHSV
FKGSVARTVG WNNAAGYFLG FVQGYAVEWW RARHNTHHVC TNEDGSDPDI KTAPLLIYVR
NKPSIAKRLN AFQRYQQYYY VPVMAILDLY WRLESIAYVA MRLPKMLPQA LALVAHYAIV
AWVFAGNYHL LPLVTVLRGF GTGITVFATH YGEDILDADQ VRHMTLVEQT ALTSRNISGG
WLVNVLTGFI SLQTEHHLFP MMPTGNLMTI QPEVRAFFKK HGLEYREGNL IECVRQNIRA
LAFEHLL