DAR5_ARATH
ID DAR5_ARATH Reviewed; 702 AA.
AC Q84WJ0; Q9FHG5;
DT 10-AUG-2010, integrated into UniProtKB/Swiss-Prot.
DT 03-MAY-2011, sequence version 2.
DT 25-MAY-2022, entry version 109.
DE RecName: Full=Protein DA1-related 5;
GN Name=DAR5; OrderedLocusNames=At5g66630; ORFNames=K1F13.31;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10718197; DOI=10.1093/dnares/7.1.31;
RA Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Kotani H.,
RA Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. X. Sequence
RT features of the regions of 3,076,755 bp covered by sixty P1 and TAC
RT clones.";
RL DNA Res. 7:31-63(2000).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=9734815; DOI=10.1093/dnares/5.3.203;
RA Kotani H., Nakamura Y., Sato S., Asamizu E., Kaneko T., Miyajima N.,
RA Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. VI. Sequence
RT features of the regions of 1,367,185 bp covered by 19 physically assigned
RT P1 and TAC clones.";
RL DNA Res. 5:203-216(1998).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
RN [6]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=18483219; DOI=10.1101/gad.463608;
RA Li Y., Zheng L., Corke F., Smith C., Bevan M.W.;
RT "Control of final seed and organ size by the DA1 gene family in Arabidopsis
RT thaliana.";
RL Genes Dev. 22:1331-1336(2008).
CC -!- SEQUENCE CAUTION:
CC Sequence=BAB10890.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AB018119; BAB10890.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AB013389; BAB10890.1; JOINED; Genomic_DNA.
DR EMBL; CP002688; AED98241.1; -; Genomic_DNA.
DR EMBL; BT003163; AAO24595.1; -; mRNA.
DR EMBL; AK227655; BAE99642.1; -; mRNA.
DR RefSeq; NP_201464.2; NM_126061.3.
DR AlphaFoldDB; Q84WJ0; -.
DR SMR; Q84WJ0; -.
DR STRING; 3702.AT5G66630.1; -.
DR PaxDb; Q84WJ0; -.
DR PRIDE; Q84WJ0; -.
DR ProteomicsDB; 224678; -.
DR EnsemblPlants; AT5G66630.1; AT5G66630.1; AT5G66630.
DR GeneID; 836795; -.
DR Gramene; AT5G66630.1; AT5G66630.1; AT5G66630.
DR KEGG; ath:AT5G66630; -.
DR Araport; AT5G66630; -.
DR TAIR; locus:2154890; AT5G66630.
DR eggNOG; KOG1703; Eukaryota.
DR HOGENOM; CLU_392985_0_0_1; -.
DR InParanoid; Q84WJ0; -.
DR OMA; KFCQIEL; -.
DR OrthoDB; 582946at2759; -.
DR PRO; PR:Q84WJ0; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q84WJ0; baseline and differential.
DR Genevisible; Q84WJ0; AT.
DR GO; GO:0043531; F:ADP binding; IEA:InterPro.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0043130; F:ubiquitin binding; IBA:GO_Central.
DR Gene3D; 3.40.50.300; -; 1.
DR InterPro; IPR045218; DA1-like.
DR InterPro; IPR022087; DA1-like_dom.
DR InterPro; IPR002182; NB-ARC.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR008808; Powdery_mildew-R_dom.
DR InterPro; IPR001781; Znf_LIM.
DR PANTHER; PTHR24209; PTHR24209; 1.
DR Pfam; PF12315; DA1-like; 1.
DR Pfam; PF00412; LIM; 1.
DR Pfam; PF00931; NB-ARC; 1.
DR Pfam; PF05659; RPW8; 1.
DR SMART; SM00132; LIM; 1.
DR SUPFAM; SSF52540; SSF52540; 1.
DR PROSITE; PS00478; LIM_DOMAIN_1; 1.
DR PROSITE; PS50023; LIM_DOMAIN_2; 1.
DR PROSITE; PS51153; RPW8; 1.
DR PROSITE; PS00142; ZINC_PROTEASE; 1.
PE 2: Evidence at transcript level;
KW LIM domain; Metal-binding; Reference proteome; Zinc.
FT CHAIN 1..702
FT /note="Protein DA1-related 5"
FT /id="PRO_0000396940"
FT DOMAIN 1..155
FT /note="RPW8"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00495"
FT DOMAIN 178..305
FT /note="NB-ARC"
FT DOMAIN 345..416
FT /note="LIM zinc-binding"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00125"
FT REGION 630..649
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 630..644
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CONFLICT 458
FT /note="G -> S (in Ref. 4; AAO24595 and 5; BAE99642)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 702 AA; 80246 MW; F9721201808383B0 CRC64;
MPISDVASLV GGAALGAPLS EIFKLVIEEA KKVKDFKPLS QDLASTMERL VPIFNEIDMM
QQGSNRGTSE LKVLTETMER AGEMVHKCSR IQWYSIAKKA LYTREIKAIN QDFLKFCQIE
LQLIQHRNQL QYMRSMGMAS VSTKADLLSD IGNEFSKLCL VAQPEVVTKF WLKRPLMELK
KMLFEDGVVT VVVSAPYALG KTTLVTKLCH DADVKEKFKQ IFFISVSKFP NVRLIGHKLL
EHIGCKANEY ENDLDAMLYI QQLLKQLGRN GSILLVLDDV WAEEESLLQK FLIQLPDYKI
LVTSRFEFTS FGPTFHLKPL IDDEVECRDE IEENEKLPEV NPPLSMCGGC NSAVKHEESV
NILGVLWHPG CFCCRSCDKP IAIHELENHV SNSRGKFHKS CYERYCYVCK EKKMKTYNIH
PFWEERYCPV HEADGTPKCC SCERLEPRGT KYGKLSDGRW LCLECGKSAM DSDECQPLYF
DMRDFFESLN MKIEKEFPLI LVRKELLNKK EEKIDNHYEV LIRAYCMSEQ KIMTYVSEEP
RTGQNKQLID MDTEPQGVVH ECKVTAILIL YGLPRLLTGY ILAHEMMHAW LRLNGHMNLN
NILEEGICQV LGHLWLESQT YATADTTADA ASASSSSSRT PPAASASKKG EWSDFDKKLV
EFCKNQIETD ESPVYGLGFR TVNEMVTNSS LQETLKEILR RR
