DB10_NICSY
ID DB10_NICSY Reviewed; 607 AA.
AC P46942;
DT 01-NOV-1995, integrated into UniProtKB/Swiss-Prot.
DT 01-NOV-1995, sequence version 1.
DT 03-AUG-2022, entry version 96.
DE RecName: Full=ATP-dependent RNA helicase-like protein DB10;
DE EC=3.6.4.13;
OS Nicotiana sylvestris (Wood tobacco) (South American tobacco).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae;
OC Nicotiana.
OX NCBI_TaxID=4096;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA].
RX PubMed=8111024; DOI=10.1007/bf00040593;
RA Itadani H., Sugita M., Sugiura M.;
RT "Structure and expression of a cDNA encoding an RNA helicase-like protein
RT in tobacco.";
RL Plant Mol. Biol. 24:249-252(1994).
CC -!- CATALYTIC ACTIVITY:
CC Reaction=ATP + H2O = ADP + H(+) + phosphate; Xref=Rhea:RHEA:13065,
CC ChEBI:CHEBI:15377, ChEBI:CHEBI:15378, ChEBI:CHEBI:30616,
CC ChEBI:CHEBI:43474, ChEBI:CHEBI:456216; EC=3.6.4.13;
CC -!- SIMILARITY: Belongs to the DEAD box helicase family. {ECO:0000305}.
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DR EMBL; D16247; BAA03763.1; -; mRNA.
DR PIR; S42639; S42639.
DR RefSeq; NP_001289543.1; NM_001302614.1.
DR AlphaFoldDB; P46942; -.
DR SMR; P46942; -.
DR STRING; 4096.XP_009768647.1; -.
DR GeneID; 104219642; -.
DR eggNOG; KOG0331; Eukaryota.
DR Proteomes; UP000189701; Unplaced.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0016887; F:ATP hydrolysis activity; IEA:RHEA.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003724; F:RNA helicase activity; IEA:UniProtKB-EC.
DR CDD; cd00201; WW; 1.
DR Gene3D; 3.40.50.300; -; 2.
DR InterPro; IPR011545; DEAD/DEAH_box_helicase_dom.
DR InterPro; IPR014001; Helicase_ATP-bd.
DR InterPro; IPR001650; Helicase_C.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR000629; RNA-helicase_DEAD-box_CS.
DR InterPro; IPR014014; RNA_helicase_DEAD_Q_motif.
DR InterPro; IPR001202; WW_dom.
DR InterPro; IPR036020; WW_dom_sf.
DR Pfam; PF00270; DEAD; 1.
DR Pfam; PF00271; Helicase_C; 1.
DR SMART; SM00487; DEXDc; 1.
DR SMART; SM00490; HELICc; 1.
DR SMART; SM00456; WW; 1.
DR SUPFAM; SSF51045; SSF51045; 1.
DR SUPFAM; SSF52540; SSF52540; 1.
DR PROSITE; PS00039; DEAD_ATP_HELICASE; 1.
DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR PROSITE; PS51194; HELICASE_CTER; 1.
DR PROSITE; PS51195; Q_MOTIF; 1.
DR PROSITE; PS01159; WW_DOMAIN_1; 1.
DR PROSITE; PS50020; WW_DOMAIN_2; 1.
PE 2: Evidence at transcript level;
KW ATP-binding; Helicase; Hydrolase; Nucleotide-binding; Reference proteome;
KW RNA-binding.
FT CHAIN 1..607
FT /note="ATP-dependent RNA helicase-like protein DB10"
FT /id="PRO_0000055118"
FT DOMAIN 18..52
FT /note="WW"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00224"
FT DOMAIN 176..350
FT /note="Helicase ATP-binding"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00541"
FT DOMAIN 379..523
FT /note="Helicase C-terminal"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00542"
FT REGION 1..25
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 66..108
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 519..607
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT MOTIF 145..173
FT /note="Q motif"
FT MOTIF 298..301
FT /note="DEAD box"
FT COMPBIAS 562..588
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 589..607
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT BINDING 189..196
FT /ligand="ATP"
FT /ligand_id="ChEBI:CHEBI:30616"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00541"
SQ SEQUENCE 607 AA; 65989 MW; F3E7A6E81B6645F3 CRC64;
MAVVTASSAG PSYAPEDPTL PKPWKGLVDG TTGFIYFWNP ETNDTQYERP VPSSHAVSAP
AHKSSVFVSS SVEKPSQGQR YDADGGHNRG SNNKIARSSS DRFHDGTSVH EGYGSLGVGS
DISQESYCRR NEISVTGGDV PAPLTSFEAT GFPSEIVREM HQAGFSAPTP IQAQSWPIAL
QGRDIVAIAK TGSGKTLGYL MPAFIHLQQR RKNPQLGPTI LVLSPTRELA TQIQAEAVKF
GKSSRISCTC LYGGAPKGPQ LRELSRGVDI VVATPGRLND ILEMRRVSLG QVSYLVLDEA
DRMLDMGFEP QIRKIVKEVP VQRQTLMYTA TWPKGVRKIA ADLLVNSVQV NIGNVDELVA
NKSITQHIEV VLPMEKQRRV EQILRSKEPG SKIIIFCSTK KMCDQLSRNL TRNFGAAAIH
GDKSQGERDY VLSQFRAGRS PVLVATDVAA RGLDIKDIRV VINYDFPTGI EDYVHRIGRT
GRAGASGLAY TFFSDQDSKH ALDLVKVLEG ANQCVPTELR DMASRGGGMG RARNHWGSGP
GGRGGRGGPY NSSYVGRNGG HGYDRGSRDS DRYGHGTYNA DAPRKRSRSR SPNIGSGWSG
KKSRFTD