DB3L_DIOPO
ID DB3L_DIOPO Reviewed; 272 AA.
AC Q75N35;
DT 17-JUN-2020, integrated into UniProtKB/Swiss-Prot.
DT 05-JUL-2004, sequence version 1.
DT 25-MAY-2022, entry version 55.
DE RecName: Full=Dioscorin DB3L {ECO:0000305};
DE AltName: Full=Tuber storage protein DB3L {ECO:0000305};
DE Flags: Precursor;
GN Name=DB3L {ECO:0000312|EMBL:BAD18020.1};
OS Dioscorea polystachya (Chinese yam).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Dioscoreales; Dioscoreaceae;
OC Dioscorea.
OX NCBI_TaxID=55575;
RN [1] {ECO:0000312|EMBL:BAD18020.1}
RP NUCLEOTIDE SEQUENCE [MRNA], PROTEIN SEQUENCE OF 26-267, FUNCTION, ACTIVITY
RP REGULATION, BIOPHYSICOCHEMICAL PROPERTIES, SUBUNIT, TISSUE SPECIFICITY,
RP PTM, IDENTIFICATION BY MASS SPECTROMETRY, AND DISULFIDE BONDS.
RC TISSUE=Tuber {ECO:0000303|PubMed:15047697, ECO:0000312|EMBL:BAD18020.1};
RX PubMed=15047697; DOI=10.1074/jbc.m402139200;
RA Gaidamashvili M., Ohizum Y., Iijima S., Takayama T., Ogawa T., Muramoto K.;
RT "Characterization of the yam tuber storage proteins from Dioscorea batatas
RT exhibiting unique lectin activities.";
RL J. Biol. Chem. 279:26028-26035(2004).
CC -!- FUNCTION: Maltose-binding lectin. No affinity is detected toward
CC glucose. Has hemagglutinating activity against rabbit erythrocytes at
CC 3.9 ug/ml. No carbonate dehydratase or trypsin inhibitor activity
CC detected by measuring the hydrolysis of 4-nitrophenyl acetate or the
CC inhibition of bovine trypsin-catalyzed hydrolysis of N-benzoyl-L-
CC arginine ethyl ester, respectively. {ECO:0000269|PubMed:15047697}.
CC -!- ACTIVITY REGULATION: Loss of hemagglutinating activity by EDTA
CC treatment. The activity is fully recovered by the addition of 5 mM
CC Ca(2+) ions, but not with Mg(2+) and Mn 2(+). Hemagglutination activity
CC is inhibited by maltose and its derivatives, with maltopentaose and
CC maltohexaose being the best inhibitors followed by maltose and iso
CC maltose. Not inhibited by glycoproteins. {ECO:0000269|PubMed:15047697}.
CC -!- BIOPHYSICOCHEMICAL PROPERTIES:
CC pH dependence:
CC Full hemagglutinating activity after 3 hours of incubation at pH 3-9
CC at room temperature. {ECO:0000269|PubMed:15047697};
CC Temperature dependence:
CC The hemagglutinating activity is stable at 50 degrees Celsius up to
CC 40 min, but decreases to 50% after 80 min.
CC {ECO:0000269|PubMed:15047697};
CC -!- SUBUNIT: Homodimer; disulfide-linked. {ECO:0000269|PubMed:15047697}.
CC -!- TISSUE SPECIFICITY: Expressed in tuber (at protein level).
CC {ECO:0000269|PubMed:15047697}.
CC -!- PTM: Not glycosylated. {ECO:0000269|PubMed:15047697}.
CC -!- SIMILARITY: Belongs to the alpha-class carbonic anhydrase family.
CC {ECO:0000305}.
CC -!- CAUTION: Despite overall sequence similarity to the typical alpha class
CC carbonic anhydrases, lacks one of the three conserved catalytic zinc-
CC ligand histidines. {ECO:0000305}.
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DR EMBL; AB178472; BAD18020.1; -; mRNA.
DR AlphaFoldDB; Q75N35; -.
DR SMR; Q75N35; -.
DR GO; GO:0048030; F:disaccharide binding; IDA:UniProtKB.
DR GO; GO:1901982; F:maltose binding; IDA:UniProtKB.
DR GO; GO:0042803; F:protein homodimerization activity; IDA:UniProtKB.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR CDD; cd03124; alpha_CA_prokaryotic_like; 1.
DR Gene3D; 3.10.200.10; -; 1.
DR InterPro; IPR041891; Alpha_CA_prokaryot-like.
DR InterPro; IPR001148; CA_dom.
DR InterPro; IPR036398; CA_dom_sf.
DR InterPro; IPR023561; Carbonic_anhydrase_a-class.
DR PANTHER; PTHR18952; PTHR18952; 1.
DR Pfam; PF00194; Carb_anhydrase; 1.
DR SMART; SM01057; Carb_anhydrase; 1.
DR SUPFAM; SSF51069; SSF51069; 1.
DR PROSITE; PS51144; ALPHA_CA_2; 1.
PE 1: Evidence at protein level;
KW Direct protein sequencing; Disulfide bond; Lectin; Signal.
FT SIGNAL 1..25
FT /evidence="ECO:0000269|PubMed:15047697"
FT CHAIN 26..272
FT /note="Dioscorin DB3L"
FT /evidence="ECO:0000305|PubMed:15047697"
FT /id="PRO_5004286874"
FT DOMAIN 28..263
FT /note="Alpha-carbonic anhydrase"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01134"
FT DISULFID 53..213
FT /evidence="ECO:0000305|PubMed:15047697"
FT DISULFID 65
FT /note="Interchain"
FT /evidence="ECO:0000305|PubMed:15047697"
SQ SEQUENCE 272 AA; 31023 MW; 0658ABBB71273951 CRC64;
MSSSTLFHLF LLSSLLFSCL SNARPDEDDF SYIEGSPNGP ENWGNLNPEW KTCGNGMEQS
PINLCDDRVI QTPALGKLRT SYQAARATLK NNGHDIMVNF KSDAGSQFIN QVRYQLKRIH
FHSPSEHVLN GERFDLEVQM VHESQDQRRA VTAILFRFGR SDPFLSDLED FISQISKSEK
NEVDAGVVDP RQLLQFDDPA YYRYMGSFTA PPCTEDITWT VIKKLGTVSP RQVLMLKQAV
NENAINNARP LQPLKFRTIF FYPRQKSNHD AI