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DBP7_PICST
ID   DBP7_PICST              Reviewed;         733 AA.
AC   A3LWH3;
DT   01-MAY-2007, integrated into UniProtKB/Swiss-Prot.
DT   24-JUL-2007, sequence version 2.
DT   03-AUG-2022, entry version 77.
DE   RecName: Full=ATP-dependent RNA helicase DBP7;
DE            EC=3.6.4.13;
GN   Name=DPB7; ORFNames=PICST_60418;
OS   Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL
OS   Y-11545) (Yeast) (Pichia stipitis).
OC   Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes;
OC   Saccharomycetales; Debaryomycetaceae; Scheffersomyces.
OX   NCBI_TaxID=322104;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545;
RX   PubMed=17334359; DOI=10.1038/nbt1290;
RA   Jeffries T.W., Grigoriev I.V., Grimwood J., Laplaza J.M., Aerts A.,
RA   Salamov A., Schmutz J., Lindquist E., Dehal P., Shapiro H., Jin Y.-S.,
RA   Passoth V., Richardson P.M.;
RT   "Genome sequence of the lignocellulose-bioconverting and xylose-fermenting
RT   yeast Pichia stipitis.";
RL   Nat. Biotechnol. 25:319-326(2007).
CC   -!- FUNCTION: ATP-binding RNA helicase involved in the biogenesis of 60S
CC       ribosomal subunits and is required for the normal formation of 25S and
CC       5.8S rRNAs. {ECO:0000250}.
CC   -!- CATALYTIC ACTIVITY:
CC       Reaction=ATP + H2O = ADP + H(+) + phosphate; Xref=Rhea:RHEA:13065,
CC         ChEBI:CHEBI:15377, ChEBI:CHEBI:15378, ChEBI:CHEBI:30616,
CC         ChEBI:CHEBI:43474, ChEBI:CHEBI:456216; EC=3.6.4.13;
CC   -!- SUBCELLULAR LOCATION: Nucleus, nucleolus {ECO:0000250}.
CC   -!- DOMAIN: The Q motif is unique to and characteristic of the DEAD box
CC       family of RNA helicases and controls ATP binding and hydrolysis.
CC   -!- MISCELLANEOUS: Present with 1460 molecules/cell in log phase SD medium.
CC   -!- SIMILARITY: Belongs to the DEAD box helicase family. DDX31/DBP7
CC       subfamily. {ECO:0000305}.
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DR   EMBL; CP000499; ABN67277.2; -; Genomic_DNA.
DR   RefSeq; XP_001385306.2; XM_001385269.1.
DR   AlphaFoldDB; A3LWH3; -.
DR   SMR; A3LWH3; -.
DR   STRING; 4924.XP_001385306.2; -.
DR   PRIDE; A3LWH3; -.
DR   EnsemblFungi; ABN67277; ABN67277; PICST_60418.
DR   GeneID; 4839286; -.
DR   KEGG; pic:PICST_60418; -.
DR   eggNOG; KOG0348; Eukaryota.
DR   HOGENOM; CLU_003041_26_2_1; -.
DR   InParanoid; A3LWH3; -.
DR   OMA; AVHIKAD; -.
DR   OrthoDB; 973872at2759; -.
DR   Proteomes; UP000002258; Chromosome 5.
DR   GO; GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
DR   GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR   GO; GO:0016887; F:ATP hydrolysis activity; IEA:RHEA.
DR   GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0003724; F:RNA helicase activity; IEA:UniProtKB-EC.
DR   GO; GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
DR   Gene3D; 3.40.50.300; -; 2.
DR   InterPro; IPR011545; DEAD/DEAH_box_helicase_dom.
DR   InterPro; IPR025313; DUF4217.
DR   InterPro; IPR014001; Helicase_ATP-bd.
DR   InterPro; IPR001650; Helicase_C.
DR   InterPro; IPR027417; P-loop_NTPase.
DR   InterPro; IPR014014; RNA_helicase_DEAD_Q_motif.
DR   Pfam; PF00270; DEAD; 1.
DR   Pfam; PF13959; DUF4217; 1.
DR   Pfam; PF00271; Helicase_C; 1.
DR   SMART; SM00487; DEXDc; 1.
DR   SMART; SM01178; DUF4217; 1.
DR   SMART; SM00490; HELICc; 1.
DR   SUPFAM; SSF52540; SSF52540; 2.
DR   PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR   PROSITE; PS51194; HELICASE_CTER; 1.
DR   PROSITE; PS51195; Q_MOTIF; 1.
PE   3: Inferred from homology;
KW   ATP-binding; Helicase; Hydrolase; Nucleotide-binding; Nucleus;
KW   Reference proteome; Ribosome biogenesis; RNA-binding; rRNA processing.
FT   CHAIN           1..733
FT                   /note="ATP-dependent RNA helicase DBP7"
FT                   /id="PRO_0000285147"
FT   DOMAIN          177..372
FT                   /note="Helicase ATP-binding"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00541"
FT   DOMAIN          406..596
FT                   /note="Helicase C-terminal"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00542"
FT   REGION          1..92
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          119..139
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          687..714
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   MOTIF           144..173
FT                   /note="Q motif"
FT   MOTIF           304..307
FT                   /note="DEAD box"
FT   COMPBIAS        15..29
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        30..83
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   BINDING         190..197
FT                   /ligand="ATP"
FT                   /ligand_id="ChEBI:CHEBI:30616"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00541"
SQ   SEQUENCE   733 AA;  81740 MW;  0222BD8393478C76 CRC64;
     MDEDDGLLLN FAVPDVSVSS GSNKRTTSKV TGGKWKDRRK LQLSLQGRGR NQKKDRSATG
     KDDGKKHEND ESNDSKKRPT IEPIHGPTSK MIKFSESKGE FGGKNNSYVS SLFTSNQSSS
     QLKVTKESDE KTYLPSNAPV EDASTFEGLG INERLSKHLT ETLRFKNPTK VQKSVIPTML
     STERDLFIKA QTGSGKTLSF LLPIFHKLMM ENKHKINRDS GLFAVILTPT RELATQIYGV
     LETLTRCYHH IVPGIVIGGE KKKSEKARIR KGVNILVGTP GRLADHMENT ESLDISQLRW
     LILDEGDKLV ELGFEETITK ITNLITRNSQ IMESMHKWQG LPVRRINLLC SATMQNNVEK
     LGSIILNNPE MISDGSSSGK HSEEVTAPDQ LIQNVVVVPP KLRLVTLSAI LKKISSDMSG
     TNNSTRTIVF FSCSDSVNFH FDVFTRGGNT FKKVKNDESG KLETVEVEND TPLIGQGTAV
     YKLHGSLSQQ TRTSTLQAFI KDSKSNHSIL FCTDVASRGL DLPNIASVIE YDPPFTIDDH
     LHRIGRSARV GKEGTATLFL LPGNEEGYVD GKLQVVHPKE GNLRIVNYEN YLKDGFSAKS
     NNEDTKKKSK DPKSREGKWD IHATTWHLDI ERWLLEDSGA HDKAVQAFTS HIRAYATHLS
     SERNYFNVKL LHLGHLAKSF GLRETPKKLG KSVESNSGIQ GASKKTKKED PRKKMLRMAK
     MALKSNSDEF NYS
 
 
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