DBR1_CAEBR
ID DBR1_CAEBR Reviewed; 511 AA.
AC Q61D44; A8XG83;
DT 19-SEP-2006, integrated into UniProtKB/Swiss-Prot.
DT 23-NOV-2004, sequence version 1.
DT 03-AUG-2022, entry version 83.
DE RecName: Full=Lariat debranching enzyme;
DE EC=3.1.-.-;
GN Name=dbr-1; ORFNames=CBG12641;
OS Caenorhabditis briggsae.
OC Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
OC Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
OC Caenorhabditis.
OX NCBI_TaxID=6238;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=AF16;
RX PubMed=14624247; DOI=10.1371/journal.pbio.0000045;
RA Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R., Chen N.,
RA Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A., D'Eustachio P.,
RA Fitch D.H.A., Fulton L.A., Fulton R.E., Griffiths-Jones S., Harris T.W.,
RA Hillier L.W., Kamath R., Kuwabara P.E., Mardis E.R., Marra M.A.,
RA Miner T.L., Minx P., Mullikin J.C., Plumb R.W., Rogers J., Schein J.E.,
RA Sohrmann M., Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA Durbin R.M., Waterston R.H.;
RT "The genome sequence of Caenorhabditis briggsae: a platform for comparative
RT genomics.";
RL PLoS Biol. 1:166-192(2003).
CC -!- FUNCTION: Cleaves the 2'-5' phosphodiester linkage at the branch point
CC of lariat intron pre-mRNAs after splicing and converts them into linear
CC molecules that are subsequently degraded. It thereby facilitates
CC ribonucleotide turnover. It may also participate in retrovirus
CC replication via an RNA lariat intermediate in cDNA synthesis (By
CC similarity). {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000250}.
CC -!- SIMILARITY: Belongs to the lariat debranching enzyme family.
CC {ECO:0000305}.
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DR EMBL; HE600940; CAP31589.1; -; Genomic_DNA.
DR RefSeq; XP_002640142.1; XM_002640096.1.
DR AlphaFoldDB; Q61D44; -.
DR SMR; Q61D44; -.
DR STRING; 6238.CBG12641; -.
DR GeneID; 8582138; -.
DR KEGG; cbr:CBG_12641; -.
DR CTD; 8582138; -.
DR WormBase; CBG12641; CBP43942; WBGene00033559; Cbr-dbr-1.
DR eggNOG; KOG2863; Eukaryota.
DR HOGENOM; CLU_005893_0_0_1; -.
DR InParanoid; Q61D44; -.
DR OMA; YECVETL; -.
DR OrthoDB; 1047278at2759; -.
DR Proteomes; UP000008549; Chromosome I.
DR GO; GO:0005634; C:nucleus; ISS:UniProtKB.
DR GO; GO:0008419; F:RNA lariat debranching enzyme activity; ISS:UniProtKB.
DR GO; GO:0000398; P:mRNA splicing, via spliceosome; IBA:GO_Central.
DR GO; GO:0000375; P:RNA splicing, via transesterification reactions; ISS:UniProtKB.
DR CDD; cd00844; MPP_Dbr1_N; 1.
DR InterPro; IPR004843; Calcineurin-like_PHP_ApaH.
DR InterPro; IPR007708; DBR1_C.
DR InterPro; IPR041816; Dbr1_N.
DR InterPro; IPR029052; Metallo-depent_PP-like.
DR Pfam; PF05011; DBR1; 1.
DR Pfam; PF00149; Metallophos; 1.
DR SMART; SM01124; DBR1; 1.
DR SUPFAM; SSF56300; SSF56300; 1.
PE 3: Inferred from homology;
KW Hydrolase; mRNA processing; Nucleus; Reference proteome.
FT CHAIN 1..511
FT /note="Lariat debranching enzyme"
FT /id="PRO_0000250365"
FT REGION 473..511
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 511 AA; 57728 MW; D6B93B995B6DD540 CRC64;
MSTEETVDEV PCCGSHDEAQ CTIQHDLAPQ PLIVEEEVNN GEKKAKIAVV GCSHGEMDAI
YETMALIEEK KGYKFDLLIC CGDYQAVRNH GDLPHMSIPP KYRSLQTFYK YYSGEKKAPV
LTLFIGGNHE ASGFLCELPN GGWVAPNIFY MGFANCIQFA GLRIAGLSGI YSHGDVEFSH
YERPAFAERD VKSAYHVRNV DMFRLRQLKA ANNDKLSNPI DIMLSHDWPG GIPDFGDSAW
LFKKKDLFEA DHKSGKLGNP ALMKLIYDCR PRYYLAAHLH IKFAALVPHK GSGSERPQPT
RFLSLDKPIP GRQFMQALEI NVASDAKMEL SYDPEWLAIL KNTDLLTTAD KTKIVLPDRI
GSVPCVYDRK DFRPTAEEME EITKLGDLTI KTDTFKHTAP PLKEDTSEAK NVPPSAYYRN
PQSAEFCQWL GIKDLNYLLV EKSSDYVGIP FYMMPDSGET EFKSNQDEVD FGEDDFIIDR
GHGSEEPEAK KSRLEEEKKK KKKKIENLKT L