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DC2I1_HUMAN
ID   DC2I1_HUMAN             Reviewed;        1066 AA.
AC   Q8WVS4; Q9NW58;
DT   27-JUN-2006, integrated into UniProtKB/Swiss-Prot.
DT   18-MAY-2010, sequence version 3.
DT   03-AUG-2022, entry version 162.
DE   RecName: Full=Cytoplasmic dynein 2 intermediate chain 1;
DE   AltName: Full=Dynein 2 intermediate chain 1;
DE   AltName: Full=WD repeat-containing protein 60;
GN   Name=DYNC2I1 {ECO:0000312|HGNC:HGNC:21862}; Synonyms=WDR60;
OS   Homo sapiens (Human).
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
OX   NCBI_TaxID=9606;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX   PubMed=12853948; DOI=10.1038/nature01782;
RA   Hillier L.W., Fulton R.S., Fulton L.A., Graves T.A., Pepin K.H.,
RA   Wagner-McPherson C., Layman D., Maas J., Jaeger S., Walker R., Wylie K.,
RA   Sekhon M., Becker M.C., O'Laughlin M.D., Schaller M.E., Fewell G.A.,
RA   Delehaunty K.D., Miner T.L., Nash W.E., Cordes M., Du H., Sun H.,
RA   Edwards J., Bradshaw-Cordum H., Ali J., Andrews S., Isak A., Vanbrunt A.,
RA   Nguyen C., Du F., Lamar B., Courtney L., Kalicki J., Ozersky P.,
RA   Bielicki L., Scott K., Holmes A., Harkins R., Harris A., Strong C.M.,
RA   Hou S., Tomlinson C., Dauphin-Kohlberg S., Kozlowicz-Reilly A., Leonard S.,
RA   Rohlfing T., Rock S.M., Tin-Wollam A.-M., Abbott A., Minx P., Maupin R.,
RA   Strowmatt C., Latreille P., Miller N., Johnson D., Murray J.,
RA   Woessner J.P., Wendl M.C., Yang S.-P., Schultz B.R., Wallis J.W.,
RA   Spieth J., Bieri T.A., Nelson J.O., Berkowicz N., Wohldmann P.E.,
RA   Cook L.L., Hickenbotham M.T., Eldred J., Williams D., Bedell J.A.,
RA   Mardis E.R., Clifton S.W., Chissoe S.L., Marra M.A., Raymond C., Haugen E.,
RA   Gillett W., Zhou Y., James R., Phelps K., Iadanoto S., Bubb K., Simms E.,
RA   Levy R., Clendenning J., Kaul R., Kent W.J., Furey T.S., Baertsch R.A.,
RA   Brent M.R., Keibler E., Flicek P., Bork P., Suyama M., Bailey J.A.,
RA   Portnoy M.E., Torrents D., Chinwalla A.T., Gish W.R., Eddy S.R.,
RA   McPherson J.D., Olson M.V., Eichler E.E., Green E.D., Waterston R.H.,
RA   Wilson R.K.;
RT   "The DNA sequence of human chromosome 7.";
RL   Nature 424:157-164(2003).
RN   [2]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   TISSUE=Pancreas;
RX   PubMed=15489334; DOI=10.1101/gr.2596504;
RG   The MGC Project Team;
RT   "The status, quality, and expansion of the NIH full-length cDNA project:
RT   the Mammalian Gene Collection (MGC).";
RL   Genome Res. 14:2121-2127(2004).
RN   [3]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 710-1066.
RX   PubMed=14702039; DOI=10.1038/ng1285;
RA   Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R.,
RA   Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H.,
RA   Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S.,
RA   Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K.,
RA   Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H.,
RA   Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M.,
RA   Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K.,
RA   Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T.,
RA   Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M.,
RA   Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S.,
RA   Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H.,
RA   Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K.,
RA   Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N.,
RA   Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S.,
RA   Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O.,
RA   Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H.,
RA   Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B.,
RA   Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y.,
RA   Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K.,
RA   Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T.,
RA   Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T.,
RA   Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y.,
RA   Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H.,
RA   Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y.,
RA   Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H.,
RA   Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O.,
RA   Isogai T., Sugano S.;
RT   "Complete sequencing and characterization of 21,243 full-length human
RT   cDNAs.";
RL   Nat. Genet. 36:40-45(2004).
RN   [4]
RP   PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-247, AND IDENTIFICATION BY
RP   MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
RC   TISSUE=Cervix carcinoma;
RX   PubMed=18669648; DOI=10.1073/pnas.0805139105;
RA   Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E.,
RA   Elledge S.J., Gygi S.P.;
RT   "A quantitative atlas of mitotic phosphorylation.";
RL   Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008).
RN   [5]
RP   PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-30, AND IDENTIFICATION BY
RP   MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
RC   TISSUE=Erythroleukemia;
RX   PubMed=23186163; DOI=10.1021/pr300630k;
RA   Zhou H., Di Palma S., Preisinger C., Peng M., Polat A.N., Heck A.J.,
RA   Mohammed S.;
RT   "Toward a comprehensive characterization of a human cancer cell
RT   phosphoproteome.";
RL   J. Proteome Res. 12:260-271(2013).
RN   [6]
RP   IDENTIFICATION IN THE CYTOPLASMIC DYNEIN 2 COMPLEX, SUBCELLULAR LOCATION,
RP   AND FUNCTION.
RX   PubMed=25205765; DOI=10.1242/jcs.159038;
RA   Asante D., Stevenson N.L., Stephens D.J.;
RT   "Subunit composition of the human cytoplasmic dynein-2 complex.";
RL   J. Cell Sci. 127:4774-4787(2014).
RN   [7]
RP   VARIANT SRTD8 642-ARG--LYS-1066 DEL.
RX   PubMed=25492405; DOI=10.1111/cge.12550;
RA   McInerney-Leo A.M., Harris J.E., Leo P.J., Marshall M.S., Gardiner B.,
RA   Kinning E., Leong H.Y., McKenzie F., Ong W.P., Vodopiutz J., Wicking C.,
RA   Brown M.A., Zankl A., Duncan E.L.;
RT   "Whole exome sequencing is an efficient, sensitive and specific method for
RT   determining the genetic cause of short-rib thoracic dystrophies.";
RL   Clin. Genet. 88:550-557(2015).
RN   [8]
RP   INTERACTION WITH DYNLT2B.
RX   PubMed=26044572; DOI=10.1038/ncomms8074;
RG   UK10K;
RA   Schmidts M., Hou Y., Cortes C.R., Mans D.A., Huber C., Boldt K., Patel M.,
RA   van Reeuwijk J., Plaza J.M., van Beersum S.E., Yap Z.M., Letteboer S.J.,
RA   Taylor S.P., Herridge W., Johnson C.A., Scambler P.J., Ueffing M.,
RA   Kayserili H., Krakow D., King S.M., Beales P.L., Al-Gazali L., Wicking C.,
RA   Cormier-Daire V., Roepman R., Mitchison H.M., Witman G.B.;
RT   "TCTEX1D2 mutations underlie Jeune asphyxiating thoracic dystrophy with
RT   impaired retrograde intraflagellar transport.";
RL   Nat. Commun. 6:7074-7074(2015).
RN   [9]
RP   ERRATUM OF PUBMED:26044572.
RX   PubMed=27021811; DOI=10.1038/ncomms11270;
RG   UK10K;
RA   Schmidts M., Hou Y., Cortes C.R., Mans D.A., Huber C., Boldt K., Patel M.,
RA   van Reeuwijk J., Plaza J.M., van Beersum S.E., Yap Z.M., Letteboer S.J.,
RA   Taylor S.P., Herridge W., Johnson C.A., Scambler P.J., Ueffing M.,
RA   Kayserili H., Krakow D., King S.M., Beales P.L., Al-Gazali L., Wicking C.,
RA   Cormier-Daire V., Roepman R., Mitchison H.M., Witman G.B.;
RL   Nat. Commun. 7:11270-11270(2016).
RN   [10]
RP   VARIANTS SRTD8 631-GLN--LYS-1066 DEL AND MET-749, FUNCTION, SUBCELLULAR
RP   LOCATION, AND TISSUE SPECIFICITY.
RX   PubMed=23910462; DOI=10.1016/j.ajhg.2013.06.022;
RA   McInerney-Leo A.M., Schmidts M., Cortes C.R., Leo P.J., Gener B.,
RA   Courtney A.D., Gardiner B., Harris J.A., Lu Y., Marshall M., Scambler P.J.,
RA   Beales P.L., Brown M.A., Zankl A., Mitchison H.M., Duncan E.L., Wicking C.;
RT   "Short-rib polydactyly and Jeune syndromes are caused by mutations in
RT   WDR60.";
RL   Am. J. Hum. Genet. 93:515-523(2013).
RN   [11]
RP   SUBUNIT, FUNCTION, AND INTERACTION WITH DYNC2I2.
RX   PubMed=29742051; DOI=10.1091/mbc.e18-03-0173;
RA   Hamada Y., Tsurumi Y., Nozaki S., Katoh Y., Nakayama K.;
RT   "Interaction of WDR60 intermediate chain with TCTEX1D2 light chain of the
RT   dynein-2 complex is crucial for ciliary protein trafficking.";
RL   Mol. Biol. Cell 29:1628-1639(2018).
RN   [12]
RP   FUNCTION, INTERACTION WITH DYNC2I2, AND CHARACTERIZATION OF VARIANTS SRTD8
RP   631-GLN--LYS-1066 DEL AND MET-749.
RX   PubMed=30320547; DOI=10.7554/elife.39655;
RA   Vuolo L., Stevenson N.L., Heesom K.J., Stephens D.J.;
RT   "Dynein-2 intermediate chains play crucial but distinct roles in primary
RT   cilia formation and function.";
RL   Elife 7:0-0(2018).
RN   [13]
RP   FUNCTION.
RX   PubMed=30649997; DOI=10.1091/mbc.e18-10-0678;
RA   Tsurumi Y., Hamada Y., Katoh Y., Nakayama K.;
RT   "Interactions of the dynein-2 intermediate chain WDR34 with the light
RT   chains are required for ciliary retrograde protein trafficking.";
RL   Mol. Biol. Cell 30:658-670(2019).
RN   [14] {ECO:0007744|PDB:6RLB, ECO:0007744|PDB:6SC2}
RP   STRUCTURE BY ELECTRON MICROSCOPY (3.90 ANGSTROMS) OF THE CYTOPLASMIC DYNEIN
RP   2 COMPLEX, AND SUBUNIT.
RX   PubMed=31451806; DOI=10.1038/s41594-019-0286-y;
RA   Toropova K., Zalyte R., Mukhopadhyay A.G., Mladenov M., Carter A.P.,
RA   Roberts A.J.;
RT   "Structure of the dynein-2 complex and its assembly with intraflagellar
RT   transport trains.";
RL   Nat. Struct. Mol. Biol. 26:823-829(2019).
CC   -!- FUNCTION: Acts as one of several non-catalytic accessory components of
CC       the cytoplasmic dynein 2 complex (dynein-2 complex), a motor protein
CC       complex that drives the movement of cargos along microtubules within
CC       cilia and flagella in concert with the intraflagellar transport (IFT)
CC       system (PubMed:23910462, PubMed:25205765, PubMed:31451806,
CC       PubMed:29742051). DYNC2I1 plays a major role in retrograde ciliary
CC       protein trafficking in cilia and flagella (PubMed:29742051,
CC       PubMed:30320547, PubMed:30649997). Requires also to maintain a
CC       functional transition zone (PubMed:30320547).
CC       {ECO:0000269|PubMed:23910462, ECO:0000269|PubMed:25205765,
CC       ECO:0000269|PubMed:29742051, ECO:0000269|PubMed:30320547,
CC       ECO:0000269|PubMed:30649997, ECO:0000269|PubMed:31451806}.
CC   -!- SUBUNIT: Intermediate chain of the cytoplasmic dynein complex 2, a
CC       multisubunit complex, composed at least of eleven different proteins
CC       (PubMed:31451806, PubMed:25205765). The cytoplasmic dynein 2 complex
CC       consists of two catalytic heavy chains (HCs) and a number of non-
CC       catalytic subunits presented by intermediate chains (ICs), light
CC       intermediate chains (LICs) and light chains (LCs). Among them, a heavy
CC       chain (DYNC2H1), two intermediate chains (DYNC2I2 and DYNC2I1), a light
CC       intermediate chain (DYNC2LI1), and a light chain (DYNLT2B) are unique
CC       to the cytoplasmic dynein complex 2, but a subset of the light chains
CC       are also shared by dynein-1 and dynein-2 complexes (PubMed:25205765,
CC       PubMed:31451806). Interacts with DYNC2I2; their C-terminal domains each
CC       bind a copy of the heavy chain, and their extended N-terminal regions
CC       are held together by an array of light chain dimers (PubMed:29742051,
CC       PubMed:31451806, PubMed:30320547). Interacts with DYNLT2B
CC       (PubMed:26044572). Interacts (via the N-terminal half) with DYNLT2B-
CC       DYNLT1 dimer or with DYNLT2B-DYNLT3 dimer; this interaction is crucial
CC       for retrograde trafficking of ciliary proteins (PubMed:29742051).
CC       {ECO:0000269|PubMed:25205765, ECO:0000269|PubMed:26044572,
CC       ECO:0000269|PubMed:29742051, ECO:0000269|PubMed:30320547,
CC       ECO:0000269|PubMed:31451806}.
CC   -!- INTERACTION:
CC       Q8WVS4; Q9Y266: NUDC; NbExp=3; IntAct=EBI-2556085, EBI-357298;
CC   -!- SUBCELLULAR LOCATION: Cell projection, cilium
CC       {ECO:0000269|PubMed:23910462}. Cytoplasm, cytoskeleton, microtubule
CC       organizing center, centrosome {ECO:0000269|PubMed:25205765}.
CC       Note=Located at the base of the primary cilium in serum-starved
CC       fibroblasts. {ECO:0000269|PubMed:23910462}.
CC   -!- TISSUE SPECIFICITY: Expressed in chondrocytes (at protein level).
CC       {ECO:0000269|PubMed:23910462}.
CC   -!- DISEASE: Short-rib thoracic dysplasia 8 with or without polydactyly
CC       (SRTD8) [MIM:615503]: A form of short-rib thoracic dysplasia, a group
CC       of autosomal recessive ciliopathies that are characterized by a
CC       constricted thoracic cage, short ribs, shortened tubular bones, and a
CC       'trident' appearance of the acetabular roof. Polydactyly is variably
CC       present. Non-skeletal involvement can include cleft lip/palate as well
CC       as anomalies of major organs such as the brain, eye, heart, kidneys,
CC       liver, pancreas, intestines, and genitalia. Some forms of the disease
CC       are lethal in the neonatal period due to respiratory insufficiency
CC       secondary to a severely restricted thoracic cage, whereas others are
CC       compatible with life. Disease spectrum encompasses Ellis-van Creveld
CC       syndrome, asphyxiating thoracic dystrophy (Jeune syndrome), Mainzer-
CC       Saldino syndrome, and short rib-polydactyly syndrome.
CC       {ECO:0000269|PubMed:23910462, ECO:0000269|PubMed:25492405,
CC       ECO:0000269|PubMed:30320547}. Note=The disease is caused by variants
CC       affecting the gene represented in this entry. Fibroblasts from affected
CC       individuals exhibit a defect in ciliogenesis and aberrant accumulation
CC       of the GLI2 transcription factor at the centrosome or basal body in the
CC       absence of an obvious axoneme.
CC   -!- SIMILARITY: Belongs to the dynein light intermediate chain family.
CC       {ECO:0000305}.
CC   -!- SEQUENCE CAUTION:
CC       Sequence=BAA91528.1; Type=Erroneous initiation; Note=Truncated N-terminus.; Evidence={ECO:0000305};
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DR   EMBL; AC004863; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR   EMBL; AC124833; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR   EMBL; BC014491; AAH14491.2; -; mRNA.
DR   EMBL; AK001162; BAA91528.1; ALT_INIT; mRNA.
DR   CCDS; CCDS47757.1; -.
DR   RefSeq; NP_060521.4; NM_018051.4.
DR   PDB; 6RLB; EM; 4.50 A; C=1-1066.
DR   PDB; 6SC2; EM; 3.90 A; C=1-1066.
DR   PDBsum; 6RLB; -.
DR   PDBsum; 6SC2; -.
DR   AlphaFoldDB; Q8WVS4; -.
DR   SMR; Q8WVS4; -.
DR   BioGRID; 120422; 42.
DR   CORUM; Q8WVS4; -.
DR   IntAct; Q8WVS4; 28.
DR   MINT; Q8WVS4; -.
DR   STRING; 9606.ENSP00000384290; -.
DR   iPTMnet; Q8WVS4; -.
DR   PhosphoSitePlus; Q8WVS4; -.
DR   BioMuta; WDR60; -.
DR   DMDM; 296453073; -.
DR   EPD; Q8WVS4; -.
DR   jPOST; Q8WVS4; -.
DR   MassIVE; Q8WVS4; -.
DR   MaxQB; Q8WVS4; -.
DR   PaxDb; Q8WVS4; -.
DR   PeptideAtlas; Q8WVS4; -.
DR   PRIDE; Q8WVS4; -.
DR   ProteomicsDB; 74818; -.
DR   Antibodypedia; 10739; 44 antibodies from 11 providers.
DR   DNASU; 55112; -.
DR   Ensembl; ENST00000407559.8; ENSP00000384290.3; ENSG00000126870.16.
DR   GeneID; 55112; -.
DR   KEGG; hsa:55112; -.
DR   MANE-Select; ENST00000407559.8; ENSP00000384290.3; NM_018051.5; NP_060521.4.
DR   UCSC; uc003woe.5; human.
DR   CTD; 55112; -.
DR   DisGeNET; 55112; -.
DR   GeneCards; DYNC2I1; -.
DR   HGNC; HGNC:21862; DYNC2I1.
DR   HPA; ENSG00000126870; Low tissue specificity.
DR   MalaCards; DYNC2I1; -.
DR   MIM; 615462; gene.
DR   MIM; 615503; phenotype.
DR   neXtProt; NX_Q8WVS4; -.
DR   OpenTargets; ENSG00000126870; -.
DR   Orphanet; 474; Jeune syndrome.
DR   Orphanet; 93271; Short rib-polydactyly syndrome, Verma-Naumoff type.
DR   VEuPathDB; HostDB:ENSG00000126870; -.
DR   eggNOG; KOG1587; Eukaryota.
DR   GeneTree; ENSGT00390000013743; -.
DR   HOGENOM; CLU_010610_0_0_1; -.
DR   InParanoid; Q8WVS4; -.
DR   OMA; ILNMWVV; -.
DR   OrthoDB; 1158787at2759; -.
DR   PhylomeDB; Q8WVS4; -.
DR   TreeFam; TF329081; -.
DR   PathwayCommons; Q8WVS4; -.
DR   Reactome; R-HSA-5620924; Intraflagellar transport.
DR   SignaLink; Q8WVS4; -.
DR   BioGRID-ORCS; 55112; 7 hits in 1077 CRISPR screens.
DR   ChiTaRS; WDR60; human.
DR   GenomeRNAi; 55112; -.
DR   Pharos; Q8WVS4; Tbio.
DR   PRO; PR:Q8WVS4; -.
DR   Proteomes; UP000005640; Chromosome 7.
DR   RNAct; Q8WVS4; protein.
DR   Bgee; ENSG00000126870; Expressed in sural nerve and 180 other tissues.
DR   ExpressionAtlas; Q8WVS4; baseline and differential.
DR   Genevisible; Q8WVS4; HS.
DR   GO; GO:0005813; C:centrosome; IDA:UniProtKB.
DR   GO; GO:0097546; C:ciliary base; IDA:GO_Central.
DR   GO; GO:0097014; C:ciliary plasm; IBA:GO_Central.
DR   GO; GO:0097542; C:ciliary tip; TAS:Reactome.
DR   GO; GO:0005929; C:cilium; TAS:Reactome.
DR   GO; GO:0005868; C:cytoplasmic dynein complex; IDA:UniProtKB.
DR   GO; GO:0005615; C:extracellular space; HDA:UniProtKB.
DR   GO; GO:0000242; C:pericentriolar material; IDA:GO_Central.
DR   GO; GO:0045504; F:dynein heavy chain binding; IBA:GO_Central.
DR   GO; GO:0045503; F:dynein light chain binding; IPI:GO_Central.
DR   GO; GO:0060271; P:cilium assembly; IMP:GO_Central.
DR   GO; GO:0048704; P:embryonic skeletal system morphogenesis; IMP:GO_Central.
DR   GO; GO:0035721; P:intraciliary retrograde transport; IDA:UniProtKB.
DR   GO; GO:0042073; P:intraciliary transport; IBA:GO_Central.
DR   GO; GO:0007018; P:microtubule-based movement; IBA:GO_Central.
DR   Gene3D; 2.130.10.10; -; 2.
DR   InterPro; IPR042505; DYNC2I1.
DR   InterPro; IPR015943; WD40/YVTN_repeat-like_dom_sf.
DR   InterPro; IPR001680; WD40_repeat.
DR   InterPro; IPR036322; WD40_repeat_dom_sf.
DR   PANTHER; PTHR16022; PTHR16022; 1.
DR   SMART; SM00320; WD40; 3.
DR   SUPFAM; SSF50978; SSF50978; 1.
PE   1: Evidence at protein level;
KW   3D-structure; Cell projection; Ciliopathy; Cilium;
KW   Cilium biogenesis/degradation; Cytoplasm; Cytoskeleton; Disease variant;
KW   Phosphoprotein; Reference proteome; Repeat; WD repeat.
FT   CHAIN           1..1066
FT                   /note="Cytoplasmic dynein 2 intermediate chain 1"
FT                   /id="PRO_0000242142"
FT   REPEAT          694..734
FT                   /note="WD 1"
FT                   /evidence="ECO:0000255"
FT   REPEAT          775..821
FT                   /note="WD 2"
FT                   /evidence="ECO:0000255"
FT   REPEAT          907..947
FT                   /note="WD 3"
FT                   /evidence="ECO:0000255"
FT   REPEAT          952..992
FT                   /note="WD 4"
FT                   /evidence="ECO:0000255"
FT   REGION          22..366
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          381..408
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          473..552
FT                   /note="Binding to the DYNLT2B-DYNLT1/DYNLT3 dimer"
FT                   /evidence="ECO:0000269|PubMed:29742051"
FT   COMPBIAS        22..304
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        317..340
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        347..366
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        381..396
FT                   /note="Acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   MOD_RES         30
FT                   /note="Phosphoserine"
FT                   /evidence="ECO:0007744|PubMed:23186163"
FT   MOD_RES         247
FT                   /note="Phosphoserine"
FT                   /evidence="ECO:0007744|PubMed:18669648"
FT   VARIANT         91
FT                   /note="E -> G (in dbSNP:rs17837851)"
FT                   /id="VAR_026841"
FT   VARIANT         273
FT                   /note="Q -> R (in dbSNP:rs2788478)"
FT                   /id="VAR_026842"
FT   VARIANT         631..1066
FT                   /note="Missing (in SRTD8; Reduces interaction with IFT
FT                   proteins)"
FT                   /evidence="ECO:0000269|PubMed:23910462,
FT                   ECO:0000269|PubMed:30320547"
FT                   /id="VAR_083839"
FT   VARIANT         642..1066
FT                   /note="Missing (in SRTD8)"
FT                   /evidence="ECO:0000269|PubMed:25492405"
FT                   /id="VAR_079178"
FT   VARIANT         749
FT                   /note="T -> M (in SRTD8; does not affect interaction with
FT                   DYNC2I2; dbSNP:rs587777065)"
FT                   /evidence="ECO:0000269|PubMed:23910462,
FT                   ECO:0000269|PubMed:30320547"
FT                   /id="VAR_070197"
FT   CONFLICT        225
FT                   /note="N -> K (in Ref. 2; AAH14491)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        292
FT                   /note="S -> F (in Ref. 2; AAH14491)"
FT                   /evidence="ECO:0000305"
SQ   SEQUENCE   1066 AA;  122571 MW;  A6B4A0C3DC4CD2C2 CRC64;
     MEPGKRRTKD DTWKADDLRK HLWAIQSGGS KEERKHREKK LRKESEMDLP EHKEPRCRDP
     DQDARSRDRV AEVHTAKESP RGERDRDRQR ERRRDAKDRE KEKLKEKHRE AEKSHSRGKD
     REKEKDRRAR KEELRQTVAH HNLLGQETRD RQLLERAERK GRSVSKVRSE EKDEDSERGD
     EDRERRYRER KLQYGDSKDN PLKYWLYKEE GERRHRKPRE PDRDNKHREK SSTREKREKY
     SKEKSNSFSD KGEERHKEKR HKEGFHFDDE RHQSNVDRKE KSAKDEPRKR ESQNGEHRNR
     GASSKRDGTS SQHAENLVRN HGKDKDSRRK HGHEEGSSVW WKLDQRPGGE ETVEIEKEET
     DLENARADAY TASCEDDFED YEDDFEVCDG DDDESSNEPE SREKLEELPL AQKKEIQEIQ
     RAINAENERI GELSLKLFQK RGRTEFEKEP RTDTNSSPSR ASVCGIFVDF ASASHRQKSR
     TQALKQKMRS TKLLRLIDLD FSFTFSLLDL PPVNEYDMYI RNFGKKNTKQ AYVQCNEDNV
     ERDIQTEEIE TREVWTQHPG ESTVVSGGSE QRDTSDAVVM PKIDTPRLCS FLRAACQVMA
     VLLEEDRLAA EPSWNLRAQD RALYFSDSSS QLNTSLPFLQ NRKVSSLHTS RVQRQMVVSV
     HDLPEKSFVP LLDSKYVLCV WDIWQPSGPQ KVLICESQVT CCCLSPLKAF LLFAGTAHGS
     VVVWDLREDS RLHYSVTLSD GFWTFRTATF STDGILTSVN HRSPLQAVEP ISTSVHKKQS
     FVLSPFSTQE EMSGLSFHIA SLDESGVLNV WVVVELPKAD IAGSISDLGL MPGGRVKLVH
     SALIQLGDSL SHKGNEFWGT TQTLNVKFLP SDPNHFIIGT DMGLISHGTR QDLRVAPKLF
     KPQQHGIRPV KVNVIDFSPF GEPIFLAGCS DGSIRLHQLS SAFPLLQWDS STDSHAVTGL
     QWSPTRPAVF LVQDDTSNIY IWDLLQSDLG PVAKQQVSPN RLVAMAAVGE PEKAGGSFLA
     LVLARASGSI DIQHLKRRWA APEVDECNRL RLLLQEALWP EGKLHK
 
 
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