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DCPS_RAT
ID   DCPS_RAT                Reviewed;         336 AA.
AC   Q8K4F7;
DT   01-MAR-2005, integrated into UniProtKB/Swiss-Prot.
DT   01-OCT-2002, sequence version 1.
DT   03-AUG-2022, entry version 112.
DE   RecName: Full=m7GpppX diphosphatase;
DE            EC=3.6.1.59 {ECO:0000250|UniProtKB:Q96C86};
DE   AltName: Full=DCS-1;
DE   AltName: Full=Decapping scavenger enzyme;
DE   AltName: Full=Hint-related 7meGMP-directed hydrolase;
DE   AltName: Full=Histidine triad nucleotide-binding protein 5;
DE   AltName: Full=Histidine triad protein member 5;
DE            Short=HINT-5;
DE   AltName: Full=Scavenger mRNA-decapping enzyme DcpS;
GN   Name=Dcps; Synonyms=Dcs1, Hint5;
OS   Rattus norvegicus (Rat).
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae;
OC   Murinae; Rattus.
OX   NCBI_TaxID=10116;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [MRNA].
RC   STRAIN=Sprague-Dawley;
RA   Huang C.-H., Peng J., Chen H., Chen Y.;
RT   "Cloning and characterization of a novel member of the histidine triad
RT   protein family (HINT-5) in different vertebrate species.";
RL   Submitted (AUG-2001) to the EMBL/GenBank/DDBJ databases.
CC   -!- FUNCTION: Decapping scavenger enzyme that catalyzes the cleavage of a
CC       residual cap structure following the degradation of mRNAs by the 3'->5'
CC       exosome-mediated mRNA decay pathway. Hydrolyzes cap analog structures
CC       like 7-methylguanosine nucleoside triphosphate (m7GpppG) with up to 10
CC       nucleotide substrates (small capped oligoribonucleotides) and
CC       specifically releases 5'-phosphorylated RNA fragments and 7-
CC       methylguanosine monophosphate (m7GMP). Cleaves cap analog structures
CC       like tri-methyl guanosine nucleoside triphosphate (m3(2,2,7)GpppG) with
CC       very poor efficiency. Does not hydrolyze unmethylated cap analog
CC       (GpppG) and shows no decapping activity on intact m7GpppG-capped mRNA
CC       molecules longer than 25 nucleotides. Does not hydrolyze 7-
CC       methylguanosine diphosphate (m7GDP) to m7GMP. May also play a role in
CC       the 5'->3 mRNA decay pathway; m7GDP, the downstream product released by
CC       the 5'->3' mRNA mediated decapping activity, may be also converted by
CC       DCPS to m7GMP. Binds to m7GpppG and strongly to m7GDP. Plays a role in
CC       first intron splicing of pre-mRNAs. Inhibits activation-induced cell
CC       death. {ECO:0000250}.
CC   -!- CATALYTIC ACTIVITY:
CC       Reaction=a 5'-end (N(7)-methyl 5'-triphosphoguanosine)-ribonucleoside
CC         in mRNA + H2O = a 5'-end diphospho-ribonucleoside in mRNA + 2 H(+) +
CC         N(7)-methyl-GMP; Xref=Rhea:RHEA:65388, Rhea:RHEA-COMP:17165,
CC         Rhea:RHEA-COMP:17167, ChEBI:CHEBI:15377, ChEBI:CHEBI:15378,
CC         ChEBI:CHEBI:58285, ChEBI:CHEBI:156461, ChEBI:CHEBI:167616;
CC         EC=3.6.1.59; Evidence={ECO:0000250|UniProtKB:Q96C86};
CC   -!- ACTIVITY REGULATION: The hydrolytic product 7-methylguanosine
CC       diphosphate (m7GDP) efficiently inhibits the decapping scavenger
CC       activity and acts as a competitive inhibitor in vitro. Inhibited by
CC       2,4-diaminoquinazoline. {ECO:0000250}.
CC   -!- SUBUNIT: Homodimer. Associates with components of the exosome
CC       multienzyme ribonuclease complex, such as EXOSC3 and EXOSC4. Interacts
CC       with NDOR1. {ECO:0000250}.
CC   -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000250}. Nucleus {ECO:0000250}.
CC       Note=Predominantly localized in the nucleus. Nucleocytoplasmic
CC       shuttling protein that can transiently enter the cytoplasm in mammalian
CC       cells in a XPO1/CRM1-dependent manner. {ECO:0000250}.
CC   -!- DOMAIN: The C-terminal histidine triad (HIT) motif and the N-terminal
CC       domain are required for the decapping activity. The N-terminus is
CC       necessary but not sufficient for binding cap structures. {ECO:0000250}.
CC   -!- SIMILARITY: Belongs to the HIT family. {ECO:0000305}.
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DR   EMBL; AF411249; AAN03664.1; -; mRNA.
DR   RefSeq; NP_695214.1; NM_153302.1.
DR   AlphaFoldDB; Q8K4F7; -.
DR   SMR; Q8K4F7; -.
DR   BioGRID; 251757; 1.
DR   STRING; 10116.ENSRNOP00000013763; -.
DR   iPTMnet; Q8K4F7; -.
DR   PhosphoSitePlus; Q8K4F7; -.
DR   jPOST; Q8K4F7; -.
DR   PaxDb; Q8K4F7; -.
DR   PRIDE; Q8K4F7; -.
DR   GeneID; 266605; -.
DR   KEGG; rno:266605; -.
DR   UCSC; RGD:628887; rat.
DR   CTD; 28960; -.
DR   RGD; 628887; Dcps.
DR   eggNOG; KOG3969; Eukaryota.
DR   InParanoid; Q8K4F7; -.
DR   OrthoDB; 930557at2759; -.
DR   PhylomeDB; Q8K4F7; -.
DR   Reactome; R-RNO-429958; mRNA decay by 3' to 5' exoribonuclease.
DR   PRO; PR:Q8K4F7; -.
DR   Proteomes; UP000002494; Unplaced.
DR   GO; GO:0005737; C:cytoplasm; ISS:UniProtKB.
DR   GO; GO:0005634; C:nucleus; ISS:UniProtKB.
DR   GO; GO:0000932; C:P-body; IBA:GO_Central.
DR   GO; GO:0042802; F:identical protein binding; ISO:RGD.
DR   GO; GO:0050072; F:m7G(5')pppN diphosphatase activity; ISS:UniProtKB.
DR   GO; GO:0000340; F:RNA 7-methylguanosine cap binding; ISS:UniProtKB.
DR   GO; GO:0036245; P:cellular response to menadione; ISS:UniProtKB.
DR   GO; GO:0000290; P:deadenylation-dependent decapping of nuclear-transcribed mRNA; IBA:GO_Central.
DR   GO; GO:0110156; P:methylguanosine-cap decapping; ISO:RGD.
DR   GO; GO:0045292; P:mRNA cis splicing, via spliceosome; ISS:UniProtKB.
DR   GO; GO:0043069; P:negative regulation of programmed cell death; ISS:UniProtKB.
DR   Gene3D; 3.30.200.40; -; 1.
DR   Gene3D; 3.30.428.10; -; 1.
DR   InterPro; IPR008594; DcpS/DCS2.
DR   InterPro; IPR019808; Histidine_triad_CS.
DR   InterPro; IPR036265; HIT-like_sf.
DR   InterPro; IPR011145; Scavenger_mRNA_decap_enz_N.
DR   PANTHER; PTHR12978; PTHR12978; 1.
DR   Pfam; PF05652; DcpS; 1.
DR   PIRSF; PIRSF028973; Scavenger_mRNA_decap_enz; 1.
DR   SUPFAM; SSF102860; SSF102860; 1.
DR   SUPFAM; SSF54197; SSF54197; 1.
DR   PROSITE; PS00892; HIT_1; 1.
PE   2: Evidence at transcript level;
KW   Acetylation; Cytoplasm; Hydrolase; mRNA processing; mRNA splicing; Nucleus;
KW   Phosphoprotein; Reference proteome.
FT   INIT_MET        1
FT                   /note="Removed"
FT                   /evidence="ECO:0000250|UniProtKB:Q96C86"
FT   CHAIN           2..336
FT                   /note="m7GpppX diphosphatase"
FT                   /id="PRO_0000109797"
FT   REGION          1..36
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   MOTIF           9..12
FT                   /note="nuclear localization signal (NLS)"
FT                   /evidence="ECO:0000250"
FT   MOTIF           141..153
FT                   /note="nuclear export sequence (NES)"
FT                   /evidence="ECO:0000250"
FT   MOTIF           274..278
FT                   /note="Histidine triad motif"
FT                   /evidence="ECO:0000250"
FT   COMPBIAS        1..18
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   ACT_SITE        276
FT                   /note="Nucleophile"
FT                   /evidence="ECO:0000250"
FT   BINDING         174
FT                   /ligand="substrate"
FT                   /evidence="ECO:0000250"
FT   BINDING         184
FT                   /ligand="substrate"
FT                   /evidence="ECO:0000250"
FT   BINDING         204
FT                   /ligand="substrate"
FT                   /evidence="ECO:0000250"
FT   BINDING         206
FT                   /ligand="substrate"
FT                   /evidence="ECO:0000250"
FT   BINDING         267..278
FT                   /ligand="substrate"
FT                   /evidence="ECO:0000250"
FT   MOD_RES         2
FT                   /note="N-acetylalanine"
FT                   /evidence="ECO:0000250|UniProtKB:Q96C86"
FT   MOD_RES         23
FT                   /note="Phosphoserine"
FT                   /evidence="ECO:0000250|UniProtKB:Q96C86"
FT   MOD_RES         137
FT                   /note="N6-acetyllysine"
FT                   /evidence="ECO:0000250|UniProtKB:Q96C86"
FT   MOD_RES         141
FT                   /note="N6-acetyllysine"
FT                   /evidence="ECO:0000250|UniProtKB:Q96C86"
SQ   SEQUENCE   336 AA;  38714 MW;  AEFA4D106FC5B6AE CRC64;
     MADTAPQLKR KREQEAEEAE TPSTEEKEAG VGNGTSAPVR LPFSGFRVQK VLRESARDKI
     IFLHGKVNED SGDTHGEDAV VILEKTPFQV EHVAQLLTGN PELKLQFSND IYSTYNLFPP
     RHLSDIKTTV VYPASEKHLQ KYMRQDLRLI RETGDDYRSL TLPYLESQSL SIQWVYNILD
     KKAEADRIVF ENPDPSDGFV LIPDLKWNQQ QLDDLYLIAI CHRRGIRSLR DLTPEHLPLL
     RNILREGQEA ILKRYQVTGD RLRVYLHYLP SYYHLHVHFT ALGFEAPGSG VERAHLLAEV
     IENLECDPKH YQRRTLTFAL RTDDPLLQLL QKAQQP
 
 
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