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DERL1_PONAB
ID   DERL1_PONAB             Reviewed;         251 AA.
AC   Q5R9W3;
DT   22-NOV-2005, integrated into UniProtKB/Swiss-Prot.
DT   21-DEC-2004, sequence version 1.
DT   03-AUG-2022, entry version 89.
DE   RecName: Full=Derlin-1 {ECO:0000305};
DE   AltName: Full=Der1-like protein 1 {ECO:0000250|UniProtKB:Q9BUN8};
GN   Name=DERL1 {ECO:0000250|UniProtKB:Q9BUN8};
OS   Pongo abelii (Sumatran orangutan) (Pongo pygmaeus abelii).
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Pongo.
OX   NCBI_TaxID=9601;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   TISSUE=Heart;
RG   The German cDNA consortium;
RL   Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases.
CC   -!- FUNCTION: Functional component of endoplasmic reticulum-associated
CC       degradation (ERAD) for misfolded lumenal proteins. Forms homotetramers
CC       which encircle a large channel traversing the endoplasmic reticulum
CC       (ER) membrane. This allows the retrotranslocation of misfolded proteins
CC       from the ER into the cytosol where they are ubiquitinated and degraded
CC       by the proteasome. The channel has a lateral gate within the membrane
CC       which provides direct access to membrane proteins with no need to
CC       reenter the ER lumen first. May mediate the interaction between VCP and
CC       the misfolded protein. Also involved in endoplasmic reticulum stress-
CC       induced pre-emptive quality control, a mechanism that selectively
CC       attenuates the translocation of newly synthesized proteins into the
CC       endoplasmic reticulum and reroutes them to the cytosol for proteasomal
CC       degradation. By controlling the steady-state expression of the IGF1R
CC       receptor, indirectly regulates the insulin-like growth factor receptor
CC       signaling pathway. {ECO:0000250|UniProtKB:Q9BUN8}.
CC   -!- SUBUNIT: Homotetramer. The four subunits of the tetramer are arranged
CC       in a twofold symmetry. Forms homo- and heterooligomers with DERL2 and
CC       DERL3; binding to DERL3 is poorer than that between DERL2 and DERL3.
CC       Interacts (via SHP-box motif) with VCP. Interacts with AMFR, SELENOS,
CC       SEL1L, SELENOK and SYVN1, as well as with SEL1L-SYVN1 and VCP-SELENOS
CC       protein complexes; this interaction is weaker than that observed
CC       between DERL2 and these complexes. Interacts with NGLY1 and YOD1. Does
CC       not bind to EDEM1. Interacts with DNAJB9. Interacts with RNF103.
CC       Interacts with HM13. Interacts with XBP1 isoform 1 (via
CC       luminal/ectodomain domain); the interaction obviates the need for
CC       ectodomain shedding prior HM13/SPP-mediated XBP1 isoform 1 cleavage.
CC       Interacts with the signal recognition particle/SRP and the SRP
CC       receptor; in the process of endoplasmic reticulum stress-induced pre-
CC       emptive quality control. May interact with UBXN6. Interacts with
CC       ZFAND2B; probably through VCP. Interacts with CCDC47. Interacts with
CC       C18orf32. May interact with TRAM1. {ECO:0000250|UniProtKB:Q99J56,
CC       ECO:0000250|UniProtKB:Q9BUN8}.
CC   -!- SUBCELLULAR LOCATION: Endoplasmic reticulum membrane
CC       {ECO:0000250|UniProtKB:Q9BUN8}; Multi-pass membrane protein
CC       {ECO:0000250|UniProtKB:Q9BUN8}.
CC   -!- SIMILARITY: Belongs to the derlin family. {ECO:0000305}.
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DR   EMBL; CR859268; CAH91447.1; -; mRNA.
DR   RefSeq; NP_001125851.1; NM_001132379.1.
DR   AlphaFoldDB; Q5R9W3; -.
DR   SMR; Q5R9W3; -.
DR   STRING; 9601.ENSPPYP00000021151; -.
DR   Ensembl; ENSPPYT00000053447; ENSPPYP00000027809; ENSPPYG00000018852.
DR   GeneID; 100172781; -.
DR   KEGG; pon:100172781; -.
DR   CTD; 79139; -.
DR   eggNOG; KOG0858; Eukaryota.
DR   GeneTree; ENSGT00530000063156; -.
DR   HOGENOM; CLU_051898_3_1_1; -.
DR   InParanoid; Q5R9W3; -.
DR   OrthoDB; 1609512at2759; -.
DR   Proteomes; UP000001595; Chromosome 8.
DR   GO; GO:0036513; C:Derlin-1 retrotranslocation complex; IEA:Ensembl.
DR   GO; GO:0036502; C:Derlin-1-VIMP complex; IEA:Ensembl.
DR   GO; GO:0005769; C:early endosome; IEA:Ensembl.
DR   GO; GO:0044322; C:endoplasmic reticulum quality control compartment; IEA:Ensembl.
DR   GO; GO:0030176; C:integral component of endoplasmic reticulum membrane; IEA:Ensembl.
DR   GO; GO:0005770; C:late endosome; IEA:Ensembl.
DR   GO; GO:0051117; F:ATPase binding; ISS:UniProtKB.
DR   GO; GO:0042802; F:identical protein binding; IEA:Ensembl.
DR   GO; GO:0042288; F:MHC class I protein binding; IEA:Ensembl.
DR   GO; GO:0005047; F:signal recognition particle binding; ISS:UniProtKB.
DR   GO; GO:0031625; F:ubiquitin protein ligase binding; IEA:Ensembl.
DR   GO; GO:1990381; F:ubiquitin-specific protease binding; IEA:Ensembl.
DR   GO; GO:0030968; P:endoplasmic reticulum unfolded protein response; IEA:Ensembl.
DR   GO; GO:0071712; P:ER-associated misfolded protein catabolic process; IEA:Ensembl.
DR   GO; GO:0032092; P:positive regulation of protein binding; IEA:Ensembl.
DR   GO; GO:0031398; P:positive regulation of protein ubiquitination; IEA:Ensembl.
DR   GO; GO:0031648; P:protein destabilization; ISS:UniProtKB.
DR   GO; GO:0030970; P:retrograde protein transport, ER to cytosol; IEA:Ensembl.
DR   GO; GO:0030433; P:ubiquitin-dependent ERAD pathway; IEA:Ensembl.
DR   InterPro; IPR007599; DER1.
DR   InterPro; IPR035952; Rhomboid-like_sf.
DR   Pfam; PF04511; DER1; 1.
DR   SUPFAM; SSF144091; SSF144091; 1.
PE   2: Evidence at transcript level;
KW   Acetylation; Endoplasmic reticulum; Membrane; Phosphoprotein;
KW   Protein transport; Reference proteome; Transmembrane; Transmembrane helix;
KW   Transport; Unfolded protein response.
FT   INIT_MET        1
FT                   /note="Removed"
FT                   /evidence="ECO:0000250|UniProtKB:Q9BUN8"
FT   CHAIN           2..251
FT                   /note="Derlin-1"
FT                   /id="PRO_0000219044"
FT   TOPO_DOM        2..15
FT                   /note="Cytoplasmic"
FT                   /evidence="ECO:0000250|UniProtKB:Q9BUN8"
FT   TRANSMEM        16..31
FT                   /note="Helical; Name=1"
FT                   /evidence="ECO:0000250|UniProtKB:Q9BUN8"
FT   TOPO_DOM        32..69
FT                   /note="Lumenal"
FT                   /evidence="ECO:0000250|UniProtKB:Q9BUN8"
FT   TRANSMEM        70..89
FT                   /note="Helical; Name=2"
FT                   /evidence="ECO:0000250|UniProtKB:Q9BUN8"
FT   TOPO_DOM        90..94
FT                   /note="Cytoplasmic"
FT                   /evidence="ECO:0000250|UniProtKB:Q9BUN8"
FT   TRANSMEM        95..115
FT                   /note="Helical; Name=3"
FT                   /evidence="ECO:0000250|UniProtKB:Q9BUN8"
FT   TOPO_DOM        116..122
FT                   /note="Lumenal"
FT                   /evidence="ECO:0000250|UniProtKB:Q9BUN8"
FT   TRANSMEM        123..137
FT                   /note="Helical; Name=4"
FT                   /evidence="ECO:0000250|UniProtKB:Q9BUN8"
FT   TOPO_DOM        138..154
FT                   /note="Cytoplasmic"
FT                   /evidence="ECO:0000250|UniProtKB:Q9BUN8"
FT   TRANSMEM        155..166
FT                   /note="Helical; Name=5"
FT                   /evidence="ECO:0000250|UniProtKB:Q9BUN8"
FT   TOPO_DOM        167..170
FT                   /note="Lumenal"
FT                   /evidence="ECO:0000250|UniProtKB:Q9BUN8"
FT   TRANSMEM        171..189
FT                   /note="Helical; Name=6"
FT                   /evidence="ECO:0000250|UniProtKB:Q9BUN8"
FT   TOPO_DOM        190..251
FT                   /note="Cytoplasmic"
FT                   /evidence="ECO:0000250|UniProtKB:Q9BUN8"
FT   REGION          229..251
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   MOTIF           241..248
FT                   /note="SHP-box"
FT                   /evidence="ECO:0000250|UniProtKB:Q9BUN8"
FT   MOD_RES         2
FT                   /note="N-acetylserine"
FT                   /evidence="ECO:0000250|UniProtKB:Q9BUN8"
FT   MOD_RES         201
FT                   /note="Phosphoserine"
FT                   /evidence="ECO:0000250|UniProtKB:Q9BUN8"
FT   MOD_RES         202
FT                   /note="Phosphothreonine"
FT                   /evidence="ECO:0000250|UniProtKB:Q9BUN8"
FT   MOD_RES         226
FT                   /note="Phosphoserine"
FT                   /evidence="ECO:0000250|UniProtKB:Q9BUN8"
SQ   SEQUENCE   251 AA;  28810 MW;  59F3B62CE9703EA9 CRC64;
     MSDIGDWFRS IPAITRYWFA ATVAVPLVGK LGLISPAYLF LWPEAFLYRF QIWRPITATF
     YFPVGPGTGF LYLVNLYFLY HYSTRLETGA FDGRPADYLF MLLFNWICIV ITGLAMDMQL
     LMIPLIMSVL YVWAQLNRDM IVSFWFGTRF KACYLPWVIL GFNYIIGGSV INELIGNLVG
     HLYFFLMFRY PMDLGGRNFL STPQFLYRWL PSRRGGVSGF GVPPASMRRA ADQNGGGGRH
     NWGQGFRLGD Q
 
 
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